PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR78090.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

C2H2

Protein Properties

Length: 538aa MW: 58993.3 Da PI: 8.8158

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR78090.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	85	105	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F r nL+ H r H RWR78090.1 85 CEICNKGFQRDQNLQLHRRGH 105 *******************88 PP
2	zf-C2H2	12.6	0.0004	159	181	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H +t+ RWR78090.1 159 WKCDKCSKRYAVQSDWKAHSKTC 181 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 538 aa Download sequence
MMKSLLIQQQ PVVEENMSNL TSASGEASVS PGNRAENENI YQQSSAATNP PPVKKKRNLP 60 GNPDPHAEVI ALSPKTLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR 120 KRVYICPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT 180 CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESAKVITP NPLNNPLQYP QANASFSHGP 240 AATHINQQVQ FPHLNNNFNS HDSHGLSLKR DPQLYHQQTQ QHLKSEMPPW LSYPPVVGAG 300 PGPPAQVPTS LCHLDLPSSI FSTRLDHEFS HSQAPMHHDN PPSFQPTASP HMSATALLQK 360 AAQMGATMTK PSSSSSILGP HQGHMTTIAT TTGFGLGLSS REEMESSFVH GLTAFGNKAA 420 GLMDQTATSP AAAATPSLLH NMMNSLSSAA GLEESYEEAF GGLLGSKRKG SATESLAKTH 480 QRNDEVGAGG GGHDGLTRDF LGLRAFSHRD ILNMAAFDPC MNNPTSYEHT QNQKPWQG

Sequence ? help Back to Top

Protein Sequence Length: 538 aa Download sequence

MMKSLLIQQQ PVVEENMSNL TSASGEASVS PGNRAENENI YQQSSAATNP PPVKKKRNLP  60
GNPDPHAEVI ALSPKTLMAT NRFLCEICNK GFQRDQNLQL HRRGHNLPWK LKQRTSKEVR  120
KRVYICPEPS CVHHDPSRAL GDLTGIKKHF CRKHGEKKWK CDKCSKRYAV QSDWKAHSKT  180
CGTREYRCDC GTLFSRRDSF ITHRAFCDAL AEESAKVITP NPLNNPLQYP QANASFSHGP  240
AATHINQQVQ FPHLNNNFNS HDSHGLSLKR DPQLYHQQTQ QHLKSEMPPW LSYPPVVGAG  300
PGPPAQVPTS LCHLDLPSSI FSTRLDHEFS HSQAPMHHDN PPSFQPTASP HMSATALLQK  360
AAQMGATMTK PSSSSSILGP HQGHMTTIAT TTGFGLGLSS REEMESSFVH GLTAFGNKAA  420
GLMDQTATSP AAAATPSLLH NMMNSLSSAA GLEESYEEAF GGLLGSKRKG SATESLAKTH  480
QRNDEVGAGG GGHDGLTRDF LGLRAFSHRD ILNMAAFDPC MNNPTSYEHT QNQKPWQG

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G55110.1	1e-121	C2H2 family protein