PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR77966.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 495aa    MW: 55012.5 Da    PI: 5.4526
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR77966.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS358.21.2e-1091134943374
        GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                 +lLl+cA+a+++++  ++q+l++ l+el+sp+gd+ q+l ayf++AL  r+++s++++ ++l++ ++++ + +++ +++  f+evsP+ +f+h+++N a
  RWR77966.1 113 DLLLQCARAIAEKNSPRVQQLMWMLNELSSPYGDTEQKLGAYFLQALFCRMTDSGERCHRTLASATEKTCSFESTRKMVLKFQEVSPWATFGHVACNGA 211
                 79************************************************************8888886665555555556****************** PP

        GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg........skeeleetgerLakfAeelgvpfefnvlvak.rledle 190
                 Ilea+ege+++Hi+D++ ++++QWp+Ll+aLa+R+ +++p+lRiT+v+++++g         ++ ++e+g+r++kfA+ +gvpf+fnv+++  +l+d++
  RWR77966.1 212 ILEAFEGESKLHIVDISNTYCTQWPTLLEALATRSsDDTPHLRITTVVAARAGgagagspaVQKVMKEIGNRMEKFARLMGVPFKFNVVHHGgDLSDMN 310
                 ***********************************8889**********999899***999999************************97778****** PP

        GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh....nsesFlerflealeyysalfdsleaklpreseerikv 285
                 ++e++++ +EalaVn++  lh++     +++s+rd+v+ ++++l Pk+v+vve+ead+    ++++F ++f e+l+++s+ f+sl++++pr+s+er ++
  RWR77966.1 311 FDEIEINDDEALAVNCIGTLHSTA----PIDSHRDAVIAAFRRLHPKIVTVVEEEADLdvgtDGPDFIRGFQECLRWFSVYFESLDESFPRASNERLML 405
                 *******************99997....99999**********************87632214559********************************* PP

        GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                 Er+  gr++v++v+c  ae++er+et+++W++rl++aGF p ++s+++a+++++llr++  ++ ++    ++ ++l Wkd+p+v+++aW+
  RWR77966.1 406 ERA-AGRALVDLVSCPLAESVERRETAGRWSRRLQAAGFAPSAFSDDVADDVRALLRRYRdGWSMTAGTADAGVFLAWKDQPVVWACAWK 494
                 ***.********************************************************656677779999*****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    
MDTLFRLVSL QSDQSFNSSR TSSSSRSSRQ THNPLQEECC NPYMDEDDFS SSSSRHFFPY  60
HHQPSSSNPT TATTSIPTTH TSTTHVFEPS QFSFSSDLNA EFSASFSGKW ASDLLLQCAR  120
AIAEKNSPRV QQLMWMLNEL SSPYGDTEQK LGAYFLQALF CRMTDSGERC HRTLASATEK  180
TCSFESTRKM VLKFQEVSPW ATFGHVACNG AILEAFEGES KLHIVDISNT YCTQWPTLLE  240
ALATRSSDDT PHLRITTVVA ARAGGAGAGS PAVQKVMKEI GNRMEKFARL MGVPFKFNVV  300
HHGGDLSDMN FDEIEINDDE ALAVNCIGTL HSTAPIDSHR DAVIAAFRRL HPKIVTVVEE  360
EADLDVGTDG PDFIRGFQEC LRWFSVYFES LDESFPRASN ERLMLERAAG RALVDLVSCP  420
LAESVERRET AGRWSRRLQA AGFAPSAFSD DVADDVRALL RRYRDGWSMT AGTADAGVFL  480
AWKDQPVVWA CAWKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.10.0GRAS family protein