PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77935.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

AP2

Protein Properties

Length: 652aa MW: 71648.9 Da PI: 7.0795

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77935.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	33.1	1.4e-10	323	377	3	55
AP2 3 ykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 + V++++++gr++A+++d ++ g rk + g ++ +e+Aa+a++ a++k++g RWR77935.1 323 PRCVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 377 699**************77776664346655.77****************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence
MKPMNNNNWL GFSLSPHMNM ELSADPHHHH HHHHETQTTA ASAAPAAASS APASFFLPPN 60 HLNSSGICYG TEPGNGGLYS QLSVMPLKSD GSLCIMEALS RSQQQGMVFS SSPKLEDFMG 120 THQYGNNDRE TMSLSLDSSN LYYQQNPEPE NNRQGLLQPY RQLIQAQQHP YFQPLQEGMC 180 SGVTGHEMFQ TSMEEGPKVH QLAGCSLQLP PVAEDGIPGL KNWATRLNTP NHSLGEKMNA 240 FLGEEGSGSA SGGAMGYGDL QSLSLSMSPG SQSSYVAATQ QASPPGIAEC VAMDSKKRGN 300 GKGGHRQPVH RKSIDTFGQR TSPRCVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM 360 EEKAARAYDL AALKYWGPST HINFPLENYH DQLEEMKNMT RQEYVAHLRR KSSGFSRGAS 420 MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFIPGVNAVT NFDITRYDVE RIISSSTLLA 480 GELAKRNKEI ETTNEAIEHH TSAQNSSQEP ELAEEINSGS DWKMVLYQSS PQQPPTVDQL 540 DQKPMGDSNY RSPLLSSLHD LIGMDTINSA EGIDDSTKMT TAHLSNASSM VTSLSSPGEG 600 SPDRMGLPML FAKSPASKII SSSPLNSWIP SRQLRPAIPM AHMPVFAAWS DA

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence

MKPMNNNNWL GFSLSPHMNM ELSADPHHHH HHHHETQTTA ASAAPAAASS APASFFLPPN  60
HLNSSGICYG TEPGNGGLYS QLSVMPLKSD GSLCIMEALS RSQQQGMVFS SSPKLEDFMG  120
THQYGNNDRE TMSLSLDSSN LYYQQNPEPE NNRQGLLQPY RQLIQAQQHP YFQPLQEGMC  180
SGVTGHEMFQ TSMEEGPKVH QLAGCSLQLP PVAEDGIPGL KNWATRLNTP NHSLGEKMNA  240
FLGEEGSGSA SGGAMGYGDL QSLSLSMSPG SQSSYVAATQ QASPPGIAEC VAMDSKKRGN  300
GKGGHRQPVH RKSIDTFGQR TSPRCVTRHR WTGRYEAHLW DNSCKKEGQT RKGRQGGYDM  360
EEKAARAYDL AALKYWGPST HINFPLENYH DQLEEMKNMT RQEYVAHLRR KSSGFSRGAS  420
MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFIPGVNAVT NFDITRYDVE RIISSSTLLA  480
GELAKRNKEI ETTNEAIEHH TSAQNSSQEP ELAEEINSGS DWKMVLYQSS PQQPPTVDQL  540
DQKPMGDSNY RSPLLSSLHD LIGMDTINSA EGIDDSTKMT TAHLSNASSM VTSLSSPGEG  600
SPDRMGLPML FAKSPASKII SSSPLNSWIP SRQLRPAIPM AHMPVFAAWS DA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-106	AP2 family protein