PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77933.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 407aa MW: 45118.3 Da PI: 6.4377

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77933.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.8	1.1e-09	237	285	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq RWR77933.1 237 NSHSLAERVRREKISERMKFLQDLVPGC----SKITGKAVMLDEIINYVQSLQ 285 58************************....899***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MSLGNNSEFG FGQKCENRFN CQSPVISSSQ QFENYSETTM TTESLFFAGW DSLISSDSHH 60 QTNQSSYDAL TLESQRISDI SHLVQCPSGA GFNKLDQSLS CLESGSYADT MAPLGGCKEA 120 NHEATKQEES LPISKDEIPG QSINANKRKM KPEGSTVDSL SQFDSTQGVN VEEQKDISLA 180 SMEGLKEKDY KKRKSEQSSV ASARKVTTKQ AKDLSQNSDS SKDGYIHVRA RRGQATNSHS 240 LAERVRREKI SERMKFLQDL VPGCSKITGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP 300 ELNFDIERIL SKDILHSQGG GSSIFGFCQG MTASHPHLNG FQQRTMQSDN SIHNIQNSAN 360 LLKATNMQFC SLPQVRSVWD NELQSVVQMG FISNAPPDIL DMHGQMK

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MSLGNNSEFG FGQKCENRFN CQSPVISSSQ QFENYSETTM TTESLFFAGW DSLISSDSHH  60
QTNQSSYDAL TLESQRISDI SHLVQCPSGA GFNKLDQSLS CLESGSYADT MAPLGGCKEA  120
NHEATKQEES LPISKDEIPG QSINANKRKM KPEGSTVDSL SQFDSTQGVN VEEQKDISLA  180
SMEGLKEKDY KKRKSEQSSV ASARKVTTKQ AKDLSQNSDS SKDGYIHVRA RRGQATNSHS  240
LAERVRREKI SERMKFLQDL VPGCSKITGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP  300
ELNFDIERIL SKDILHSQGG GSSIFGFCQG MTASHPHLNG FQQRTMQSDN SIHNIQNSAN  360
LLKATNMQFC SLPQVRSVWD NELQSVVQMG FISNAPPDIL DMHGQMK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	194	LKEKDYKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.1	3e-65	bHLH family protein