PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR77395.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | YABBY | ||||||||
Protein Properties | Length: 180aa MW: 20000.7 Da PI: 7.4351 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 202.4 | 1.8e-62 | 6 | 157 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvssekls 102 + +seqvCy+ Cn+Cn ilavsvPs+slf +vtvrCGhCt+l svn+a a q l+ ++ ++ ++ + ++++ +++s +++++ ++s RWR77395.1 6 DAASEQVCYIPCNYCNIILAVSVPSSSLFDIVTVRCGHCTNLWSVNMAAALQSLSWQEI----------QTPGFISPDYRMDS-ASSSRCNKIAM-QVS 92 6789******************************************9999988887773..........44444444444332.22333333443.334 PP YABBY 103 enedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++e + v+rPPekrqrvPsayn+fikeeiqrika+nP+ishreafs+aaknWahfP+ihfgl RWR77395.1 93 ARNNEAL---AAVNRPPEKRQRVPSAYNQFIKEEIQRIKANNPEISHREAFSTAAKNWAHFPHIHFGL 157 4444444...469*****************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 180 aa Download sequence |
MSSCIDAASE QVCYIPCNYC NIILAVSVPS SSLFDIVTVR CGHCTNLWSV NMAAALQSLS 60 WQEIQTPGFI SPDYRMDSAS SSRCNKIAMQ VSARNNEALA AVNRPPEKRQ RVPSAYNQFI 120 KEEIQRIKAN NPEISHREAF STAAKNWAHF PHIHFGLMLE NNQAKLDEGS GEHLMTKAAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.1 | 4e-83 | YABBY family protein |