PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77362.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 1056aa MW: 115229 Da PI: 5.2726

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77362.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.9	2.3e-18	46	92	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEdell av+q+ g++Wk+Ia+++ Rt+ qc +rwqk+l RWR77362.1 46 KGQWTAEEDELLSTAVHQFKGRNWKKIAECFK-DRTDVQCLHRWQKVL 92 799**************************9.**********986 PP
2	Myb_DNA-binding	54.4	2.9e-17	98	144	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++++ v ++G W+tIa+ ++ gR +kqc++rw+++l RWR77362.1 98 KGPWSKEEDDIIAEMVGKYGATKWSTIAQALP-GRIGKQCRERWHNHL 144 79****************************.***********97 PP
3	Myb_DNA-binding	47.6	3.8e-15	150	192	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +++WT+eE+ l++a++ +G++ W+ + ++ gRt++ +k++w+ RWR77362.1 150 KQAWTQEEEVALIRAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 192 799*****************.*****.*********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence
MANEKAVNSR RSIIISSALS DGGGEGFQKP RPLHGRTSGP TRRSTKGQWT AEEDELLSTA 60 VHQFKGRNWK KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDDIIA EMVGKYGATK 120 WSTIAQALPG RIGKQCRERW HNHLNPSINK QAWTQEEEVA LIRAHQIYGN KWAELTKFLP 180 GRTDNAIKNH WNSSVKKKLD SYLASGLLAQ FQGPLLVEKP DECISSSSVS KEHDNGDSAF 240 KDGVEIEEIS ESSLGSVVLG CSQSDCEVAN TSPEHEWEEI NKVDKAVEKM MQHSHSLLGC 300 KRHCDATNDA RCPVQEVACS VVVCVNATDQ NLLNECGKSG NRACQLDSYE LCDATTSLDA 360 VHESAALLET SKHYTFVAGK TPNLESLLLH DTIESHALLD STVDGGLVSG GDCIENKLSE 420 AGTCEDFSLG NNVEGSNVID LDGCAGSLIY HSEIPGSDWA NRLDSSSHLY FPFRSSDLSV 480 TSCSQNLFTV ESPSLLYPGD VKPLFGSENT GVGDISSGIR DLDLIACSSD SLGYANDPVF 540 SPCRNDRAQG CMPVDPDGEN NSLKSIPMEM LGSVTSDAVG SLTLMDGSAF IHVEPPDSGS 600 LFYEPPRFPS LEIPFLSCDL VPSGGEAYSP LGIRQLMMSS MNCSAPYSLW DSPSHDDSPD 660 AILKNAARSF MCTPSILKKR QRDLLSPLRE KKSDKKPGKE INQELLSKSS SLDKNDCPCL 720 DIICENGTCK ASVPTIEGIL SPTHVKNKSV ASSKDKENSK HASCDRKDGQ LLDGRCFGKS 780 DRSNPQDDME YGVHGFDAKT MIDSDILIQT VPQPSRVLKE QNMNELLLLS PGQDGSSLKK 840 SLNGHSESSK GDQCFYGFLS SSVGKKKHAR HFVSHPLQVT FEKAGSSTDA DIENINAFAN 900 TPSIKRGIES PSAWKSPWFM NSFLPGQRFE TDTTFEDIGY FLSPGDRTYD AIGLMRQLNG 960 HTSAALAEAQ EVLASGNPER EAPQKSSDKN SQFSEKELEN LISLPRSALS FQTERRVLDF 1020 SGCGTPGKGR EDRKAPEVGT TVGLSSPSSY LLKGCR

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence

MANEKAVNSR RSIIISSALS DGGGEGFQKP RPLHGRTSGP TRRSTKGQWT AEEDELLSTA  60
VHQFKGRNWK KIAECFKDRT DVQCLHRWQK VLNPELVKGP WSKEEDDIIA EMVGKYGATK  120
WSTIAQALPG RIGKQCRERW HNHLNPSINK QAWTQEEEVA LIRAHQIYGN KWAELTKFLP  180
GRTDNAIKNH WNSSVKKKLD SYLASGLLAQ FQGPLLVEKP DECISSSSVS KEHDNGDSAF  240
KDGVEIEEIS ESSLGSVVLG CSQSDCEVAN TSPEHEWEEI NKVDKAVEKM MQHSHSLLGC  300
KRHCDATNDA RCPVQEVACS VVVCVNATDQ NLLNECGKSG NRACQLDSYE LCDATTSLDA  360
VHESAALLET SKHYTFVAGK TPNLESLLLH DTIESHALLD STVDGGLVSG GDCIENKLSE  420
AGTCEDFSLG NNVEGSNVID LDGCAGSLIY HSEIPGSDWA NRLDSSSHLY FPFRSSDLSV  480
TSCSQNLFTV ESPSLLYPGD VKPLFGSENT GVGDISSGIR DLDLIACSSD SLGYANDPVF  540
SPCRNDRAQG CMPVDPDGEN NSLKSIPMEM LGSVTSDAVG SLTLMDGSAF IHVEPPDSGS  600
LFYEPPRFPS LEIPFLSCDL VPSGGEAYSP LGIRQLMMSS MNCSAPYSLW DSPSHDDSPD  660
AILKNAARSF MCTPSILKKR QRDLLSPLRE KKSDKKPGKE INQELLSKSS SLDKNDCPCL  720
DIICENGTCK ASVPTIEGIL SPTHVKNKSV ASSKDKENSK HASCDRKDGQ LLDGRCFGKS  780
DRSNPQDDME YGVHGFDAKT MIDSDILIQT VPQPSRVLKE QNMNELLLLS PGQDGSSLKK  840
SLNGHSESSK GDQCFYGFLS SSVGKKKHAR HFVSHPLQVT FEKAGSSTDA DIENINAFAN  900
TPSIKRGIES PSAWKSPWFM NSFLPGQRFE TDTTFEDIGY FLSPGDRTYD AIGLMRQLNG  960
HTSAALAEAQ EVLASGNPER EAPQKSSDKN SQFSEKELEN LISLPRSALS FQTERRVLDF  1020
SGCGTPGKGR EDRKAPEVGT TVGLSSPSSY LLKGCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	1e-103	MYB family protein