PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR77022.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 530aa MW: 56745.4 Da PI: 6.0349

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR77022.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.3	6.5e-09	346	394	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq RWR77022.1 346 NSHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 394 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence
MIEMDWRFSG ANLTNPSASL VPTDSSITNP SMGSSVSMAD SFCPGLWDHQ SSQNLGFSEH 60 NIQSSTSTSN GVVLRNLGPG SSRSGIEKPL DIGWNLPNSI SKGGVFMHTG AGILPQNFSQ 120 FPPDTAFIER AARFSCFGGG SFSDMMNPFS IPDSLGPYSK SGGINAPELF SASGLKLASG 180 VHSQKNESHM ADVPKGVSVT VDSGAAEGSP MKSERETESI MRPTDEGKYA IGGRSNESDE 240 VEISGGGQEE QSVMENAAGE PSAKGLGAKK RKRSGQDVEL DQINGGPLLS VEHTKENVDI 300 KQKGEQNPTS ATTKPSGKHG KESAQSPDAA KEDYIHVRAR RGQATNSHSL AERVRREKIS 360 ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR LDFNLEGLLS 420 KDILHSRGSV SSTIGFAPDV SMAHPQLHPS QHGLIQAGIP GLGNQSDALR RSIASQLVAM 480 NGYKETTPQM PNIWDDELNG VVQMSFGANA PFNTQELNEP LPPGHMKVEL

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence

MIEMDWRFSG ANLTNPSASL VPTDSSITNP SMGSSVSMAD SFCPGLWDHQ SSQNLGFSEH  60
NIQSSTSTSN GVVLRNLGPG SSRSGIEKPL DIGWNLPNSI SKGGVFMHTG AGILPQNFSQ  120
FPPDTAFIER AARFSCFGGG SFSDMMNPFS IPDSLGPYSK SGGINAPELF SASGLKLASG  180
VHSQKNESHM ADVPKGVSVT VDSGAAEGSP MKSERETESI MRPTDEGKYA IGGRSNESDE  240
VEISGGGQEE QSVMENAAGE PSAKGLGAKK RKRSGQDVEL DQINGGPLLS VEHTKENVDI  300
KQKGEQNPTS ATTKPSGKHG KESAQSPDAA KEDYIHVRAR RGQATNSHSL AERVRREKIS  360
ERMKFLQDLV PGCSKVTGKA VMLDEIINYV QSLQRQVEFL SMKLATVNPR LDFNLEGLLS  420
KDILHSRGSV SSTIGFAPDV SMAHPQLHPS QHGLIQAGIP GLGNQSDALR RSIASQLVAM  480
NGYKETTPQM PNIWDDELNG VVQMSFGANA PFNTQELNEP LPPGHMKVEL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	274	KKRKRS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-108	bHLH family protein