PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76580.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

ARF

Protein Properties

Length: 730aa MW: 81626.5 Da PI: 7.4434

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76580.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	78.7	6.2e-25	131	232	1	99
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ k++a+e+ + +++ ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + +++el+ RWR76580.1 131 FCKTLTASDTSTHGGFSVLKRHADEClppldmS-QQPPMQELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSTFVSSKKLVAGDTFVFL--RGESGELR 226 99***************************63.3344459********************************************..449999 PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ RWR76580.1 227 VGVRRA 232 ***996 PP
2	Auxin_resp	111.5	8.5e-37	257	339	1	83
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ++ha++t+s+F+v+Y+Pras+ eF+v++++++++lk+++s+GmRf+m+fe+e+ + +r++Gt++g++d+dpvrWp+S+Wr Lk RWR76580.1 257 VSHAIATGSMFTVFYRPRASPMEFIVPYDQYMDTLKNNYSIGMRFRMRFEGEEGADKRFMGTITGLEDVDPVRWPGSRWRYLK 339 679*****************************************************************************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 730 aa Download sequence
MGSSLLGQCS QDSLVGREKD KKDYLKEALW SACAGPFVTV PQAGEKVFYF PQGHVEQIAA 60 YSNQDVDNLQ MPVYNLAPII LCRVVNLELK AEYDTDEVFA QFTLLPHREE KKSENTKDLH 120 SESPRPRVYS FCKTLTASDT STHGGFSVLK RHADECLPPL DMSQQPPMQE LVAKDLHGLE 180 WRFRHIYRGQ PKRHLLTSGW STFVSSKKLV AGDTFVFLRG ESGELRVGVR RAIRHQHNVS 240 ASVISSESMQ IGILATVSHA IATGSMFTVF YRPRASPMEF IVPYDQYMDT LKNNYSIGMR 300 FRMRFEGEEG ADKRFMGTIT GLEDVDPVRW PGSRWRYLKV QWDESSPILL SDRVCPWKIQ 360 TSPSSTSIHS SLVSRWKKPR ADHLPSSPDL STVGRVGSQA FLKDAMVSAQ ARHSSAGVLQ 420 GQEVEASGKL SSNGSDPGHA HNIPLSKFPP NPGWGSSRDV SGYHKDKGVE NWTYISRQDP 480 IFWDVPSGDI SPLPYTMQEA SRLSGYRLPS FSTHRPCGDV GLINSQCIPL ANPRVCGFQE 540 LTSLQPKEVV DKAMARPAES GMCMIFGVNL VKSSTESMSP SSISSSELQH SCLLPQAAPR 600 SVILESDQIS EPWKNTKSSE SSGFASATEK RKAHMITTRS CTKVHKYGTA LGRSVDLSKF 660 DGYEELLLEL DRMFDFKGGL VDSSNGWQVI YTDDEGDIML IGDYPWPEFC SMVRKMFIYP 720 REDVNKIKPW

Sequence ? help Back to Top

Protein Sequence Length: 730 aa Download sequence

MGSSLLGQCS QDSLVGREKD KKDYLKEALW SACAGPFVTV PQAGEKVFYF PQGHVEQIAA  60
YSNQDVDNLQ MPVYNLAPII LCRVVNLELK AEYDTDEVFA QFTLLPHREE KKSENTKDLH  120
SESPRPRVYS FCKTLTASDT STHGGFSVLK RHADECLPPL DMSQQPPMQE LVAKDLHGLE  180
WRFRHIYRGQ PKRHLLTSGW STFVSSKKLV AGDTFVFLRG ESGELRVGVR RAIRHQHNVS  240
ASVISSESMQ IGILATVSHA IATGSMFTVF YRPRASPMEF IVPYDQYMDT LKNNYSIGMR  300
FRMRFEGEEG ADKRFMGTIT GLEDVDPVRW PGSRWRYLKV QWDESSPILL SDRVCPWKIQ  360
TSPSSTSIHS SLVSRWKKPR ADHLPSSPDL STVGRVGSQA FLKDAMVSAQ ARHSSAGVLQ  420
GQEVEASGKL SSNGSDPGHA HNIPLSKFPP NPGWGSSRDV SGYHKDKGVE NWTYISRQDP  480
IFWDVPSGDI SPLPYTMQEA SRLSGYRLPS FSTHRPCGDV GLINSQCIPL ANPRVCGFQE  540
LTSLQPKEVV DKAMARPAES GMCMIFGVNL VKSSTESMSP SSISSSELQH SCLLPQAAPR  600
SVILESDQIS EPWKNTKSSE SSGFASATEK RKAHMITTRS CTKVHKYGTA LGRSVDLSKF  660
DGYEELLLEL DRMFDFKGGL VDSSNGWQVI YTDDEGDIML IGDYPWPEFC SMVRKMFIYP  720
REDVNKIKPW

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G62000.3	1e-177	ARF family protein