PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76395.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 359aa    MW: 38399.1 Da    PI: 3.9617
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76395.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-1611521050
                HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
      SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                 v f+kRrn++ KKA+ELS+LC+ ++av+++s stgk+ +y 
  RWR76395.1 11 DVKFAKRRNTLYKKAQELSILCGSDIAVVVISsSTGKVSTYG 52
                689************************98875279*****95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MGKRKCFEQE DVKFAKRRNT LYKKAQELSI LCGSDIAVVV ISSSTGKVST YGSPDPGIVI  60
GRYQSQKKNV QDGARSGSGK VVMTKDEENT MKHLLVPYEE DNLGKIPNPE PMTTEPFLLP  120
GLMEIASSSS SWMPSSSSIQ SSQPLATSYG CGLDGLSYFD FDANSSGLID PKSLNQESGA  180
TYGSAPYMFY SSSSFSSSGS GFGFVSSSSD YGCGFNGLSA PDSQGCGLDP NFLNQERGAQ  240
YDGSSIPISY SSSSSSSSSV SSVLPLSSST DCLQPMATPP TGYGFDDPVS LDVTELEPSF  300
DVGEFLDELN QSHPISPSSN GHGFNDDDPL LFDVNDDDAL FFDVIDDDPL FFDVNEFLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-10MIKC_MADS family protein