PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76394.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 361aa    MW: 38654.4 Da    PI: 3.9304
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76394.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF51.51.3e-1611521050
                HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
      SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                 v f+kRrn++ KKA+ELS+LC+ ++av+++s stgk+ +y 
  RWR76394.1 11 DVKFAKRRNTLYKKAQELSILCGSDIAVVVISsSTGKVSTYG 52
                689************************98875279*****95 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MGKRKCFEQE DVKFAKRRNT LYKKAQELSI LCGSDIAVVV ISSSTGKVST YGSPDPGIVI  60
GRYQSQKKNV QDGARSGSGK VIMTKDEENT MKHLLVPYEE ENLGTIPNPE PMTTEPFLLP  120
GLMEIASFSS SWMPSSSSIQ SSQPLATSYG CGGGLDGLSY FDFDASSSGL IDPKSLNQES  180
GATYGSAPYM FYSSSSFSSS GSGFGFVSSS SDYGCGFNGF SAPDSQGCGL DPNFLNQERG  240
AQYDGSSIPI SYSSSSSSSS SVSSVLPPSS STDCLQPMAT PPTGYGFDDP LSLDVTELEP  300
SFDVGEFLDE LYQSHPISPS SNGHGFNDDD PLLFDVNDDD PLFFDVIDDD PLFFDVNEFL  360
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-10MIKC_MADS family protein