PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76350.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family M-type_MADS
Protein Properties Length: 368aa    MW: 39379.2 Da    PI: 3.955
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76350.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF49.94e-1618591050
                HHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-.TTSEEEEEE CS
      SRF-TF 10 qvtfskRrngilKKAeELSvLCdaevaviifs.stgklyeys 50
                 v f+kRrn++ KKA+ELS+LC+ ++av+++s stgk+ +y 
  RWR76350.1 18 DVKFAKRRNTLYKKAQELSILCGSDIAVVVISrSTGKVSTYG 59
                689****************************9568****995 PP
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    
MGKRKSFEQK GVQGHEEDVK FAKRRNTLYK KAQELSILCG SDIAVVVISR STGKVSTYGS  60
PDPGIVIGRY QSQKKNVQDG ARSGSGKVIM TKDEENTMKQ LLVPYEEENL GTIPNPEPMT  120
TEPFLLPGLM EIPSSSSSWM PSSSSIQSSQ PLATSYGCGG GMDGLSYFDF DAGSSGLIDP  180
NSWNQEESGA MYGSAPMIYS SSSFSSSGSG FGFVSSSSDY GCGFNGFSAP DSQGCGLDPN  240
FLNQERGAQY DGSSIPISYS SSSSSSSSVS SVLPPSSSTN CLQPMATLPT GYGFDDPLSL  300
DVTELEPSFD VGELLDELNQ SHPISPSCNG HGFNDDDPLL FDVNDDDSLF FDMIDDDPLF  360
FDVNEFLK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.11e-10MIKC_MADS family protein