PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR76301.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 354aa MW: 40617.8 Da PI: 5.5441

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR76301.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.4	4.5e-10	202	242	2	44
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 rW++ + e +++a++q+G + ++ I + ++ gRt+ q+k+++ RWR76301.1 202 ERWSKSDTEMFYEAIRQFGAD-FAMIQQLFP-GRTRHQVKLKF 242 69*****************.*****.*******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence
MQLRKRKAVL SHVDENGDGI AENSNINLMD DKNGSDNEHN GEDGEDTMKR RKVPRRTKGP 60 ATKTDKPSRR RKKASDGADP INKEPSKKKF CHSTRKNRRT VSKELLETAE EDIDHSKLRM 120 KDLIILAEIK ERRSNKEAEA LKKSFPYQSA DNPTPNDAPY DDEDPLASTE GLHPEDDRAN 180 LKYESSCRKL NYHSFMNRTP TERWSKSDTE MFYEAIRQFG ADFAMIQQLF PGRTRHQVKL 240 KFKAEERKHP LQVNDALSHR SKDLSHFALV IERLQEAQAE QNANRDADFP DVPSENEEVG 300 AESEPKGEEV AKEELEAHSP VKSNASQEFF DGSQYGTADE PYLQDMEEFE YVSF

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence

MQLRKRKAVL SHVDENGDGI AENSNINLMD DKNGSDNEHN GEDGEDTMKR RKVPRRTKGP  60
ATKTDKPSRR RKKASDGADP INKEPSKKKF CHSTRKNRRT VSKELLETAE EDIDHSKLRM  120
KDLIILAEIK ERRSNKEAEA LKKSFPYQSA DNPTPNDAPY DDEDPLASTE GLHPEDDRAN  180
LKYESSCRKL NYHSFMNRTP TERWSKSDTE MFYEAIRQFG ADFAMIQQLF PGRTRHQVKL  240
KFKAEERKHP LQVNDALSHR SKDLSHFALV IERLQEAQAE QNANRDADFP DVPSENEEVG  300
AESEPKGEEV AKEELEAHSP VKSNASQEFF DGSQYGTADE PYLQDMEEFE YVSF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	49	72	KRRKVPRRTKGPATKTDKPSRRRK
2	50	73	KRRKVPRRTKGPATKTDKPSRRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	3e-47	MYB_related family protein