PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR76278.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | C3H | ||||||||
Protein Properties | Length: 458aa MW: 50526.7 Da PI: 7.8706 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 38.6 | 1.7e-12 | 51 | 76 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ++++ C++++rtG+C yG+rC+F+H+ RWR76278.1 51 PGEPDCMYYLRTGFCGYGSRCRFNHP 76 5789*********************9 PP | |||||||
2 | zf-CCCH | 35.3 | 2e-11 | 94 | 118 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f++tGtC++G++Ck++H++ RWR76278.1 94 QPDCQYFLKTGTCRFGATCKYHHPR 118 789********************96 PP | |||||||
3 | zf-CCCH | 34.5 | 3.6e-11 | 142 | 163 | 6 | 27 |
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C++++rtG Ck+G Ck+ H++ RWR76278.1 142 CSYYMRTGSCKFGIACKYDHPQ 163 ********************97 PP | |||||||
4 | zf-CCCH | 41.1 | 2.9e-13 | 305 | 329 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++Cr++++tG CkyG++Ck++H++ RWR76278.1 305 QPECRYYMKTGSCKYGSTCKYHHPK 329 799********************96 PP | |||||||
5 | zf-CCCH | 34.2 | 4.3e-11 | 349 | 375 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C f++ +G+CkyG++Ck+ H++ RWR76278.1 349 PGQAICTFYRMYGICKYGSTCKYDHPM 375 5789*********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 458 aa Download sequence |
MPGNWGAQMN GVSRSSNMDN SKLEDSMWHL KIQVDKQDGV EDNSNLYPDR PGEPDCMYYL 60 RTGFCGYGSR CRFNHPTKRG QITQSRELPE RVGQPDCQYF LKTGTCRFGA TCKYHHPRDR 120 HDAEQVPLNI LGLPMRQEEN SCSYYMRTGS CKFGIACKYD HPQPAAVGAV LPIVPSAYCY 180 TGAQMTPTSG LSNVGDLPAW SLPNVSYMST SRMQSPLSYM PVVLSPSQGM IPAQQGWSTY 240 MATVLFHLLH ASDPCFTADQ SALSPGSSSD TITTNLVYNS KHLGDPVSSG SLLTSVQQFP 300 ERSDQPECRY YMKTGSCKYG STCKYHHPKE RHVPLATGTL SPQGLPLRPG QAICTFYRMY 360 GICKYGSTCK YDHPMAGYYN YSLPAFSIPD TSLTPYQSSF QISHASSESS PSKASKSSYQ 420 VTEPEAVGTK RQSPNKEAPE SATPQTVSQS QTIPISSD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04990.2 | 5e-97 | C3H family protein |