PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR76001.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family Trihelix
Protein Properties Length: 464aa    MW: 52446.8 Da    PI: 6.6579
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR76001.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.79.9e-21124228186
    trihelix   1 rWtkqevlaLiearremeerlrrgk..................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcp 80 
                 +Wt++ v++Li a+ +++++   +                   +k ++W+ vs+ m+e g+ +sp+qC++k+++lnkryk+++e+ +++ +++++++  
  RWR76001.1 124 KWTDKAVRLLIMAVAYVGDDGVVDGgvgaavatawpkrkfgsvQKRGKWRMVSRMMMEMGCYVSPQQCEDKFNDLNKRYKRLNEILGRGiSCQVVENPI 222
                 7**************7777777554455566667777777778**********************************************99******99 PP

    trihelix  81 yfdqle 86 
                 ++d+++
  RWR76001.1 223 LLDSMN 228
                 999997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    
MDDSGVLGGG ILSGPASSSR FLDPNPSIQR AGSLSHHYHH RRHHHHHHMD GMEPMGIAVT  60
KGALRNCSSR RKGVSAIGNN SNASSDDVGV GVDVDDERSV MEDENDVHVN GAKGKKGSMW  120
QRMKWTDKAV RLLIMAVAYV GDDGVVDGGV GAAVATAWPK RKFGSVQKRG KWRMVSRMMM  180
EMGCYVSPQQ CEDKFNDLNK RYKRLNEILG RGISCQVVEN PILLDSMNHI SLKMKNTVRK  240
ILSSKHLFYR EMCAYHNGLL RAYSKPLPQF FEEGNGIGKD GDDDDDDDDD DDDNENEDCD  300
DDWENEGDAN GDEYVERIAD LGKKKINADN CSFWSQPVGL HDGIGAGMAA VVRETATKSP  360
LEHQDIRNRL LQLHGQRVSV QAQVFELKRR RLEWQRFCGD KDRELERLRL ENERFRLENE  420
QMALQLKKKE MEIYFRRSDA SFNPVTTAMD RIQGRNQINL GSVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1388392KRRRL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-52Trihelix family protein