PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75187.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family GRAS
Protein Properties Length: 550aa    MW: 59837.8 Da    PI: 5.269
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75187.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS221.44.5e-681455462374
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalkl..fsevsPilkfshlt 97 
                 ++lL  cA a+ +g+l+++++lL  l+elas +gd++ Rlaa+ ++AL ++l++s+s  +  ++  + ++   ++ +l+  +l  f+e+sP++ f + +
  RWR75187.1 145 EQLLNPCASAIGAGNLSRVRHLLYVLHELASLSGDANYRLAAHGLRALTNHLSSSGSVSVPGVSIDRPPTFAtTEPRLFQNSLikFHELSPWFSFPNSL 243
                 689***************************************************8777776665555554442334444444478************** PP

        GRAS  98 aNqaIleavege...............ervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                 aN  Il+ + +                + +Hi+D+++s+G+QWp+Ll++La+Rp ++pp +R+T+v+++ +     s      + +rL +fA++ ++++
  RWR75187.1 244 ANASILQTLTTLdpsqqnsssssssrqRNLHIVDIGVSHGIQWPTLLESLANRPgGPPPLVRLTVVAAAGTPasfsSGPPGDDYPSRLLRFAKRNNLNL 342
                 ******998754444455666677776788************************55566*******99655467789999******************* PP

        GRAS 177 efnvlvakrledleleeLrvkp..........gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse....sFlerfleal 261
                 +++ + ++ l++l+ e+L v +          +E+l+++ +++lh+l++e+ +    r+e+L+ +++l+P++vv++e++ d++ +    +F+ +f + +
  RWR75187.1 343 QIDRVESHPLQTLTAEALGVASrgegegegekEETLIICAQFRLHQLPHEDPDD---RTEFLRRMRDLEPDLVVLTENDGDCSCScccgDFALGFPRRV 438
                 ****9999**********9998899999999899**************666554...56********************8886655666********** PP

        GRAS 262 eyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveee..sgs 357
                 e+ ++l+ds++a +    + r   Er++++ e+  +++ + ++    +e ++ W er+++ GF    ++e+a++  ++llrk++ ++++r ee+  +g+
  RWR75187.1 439 EFAWKLLDSTSAAF----KGRECQERRVIEGEAATALSSAAEM----NEGKAGWCERMRRLGFIGEGFGEEAVEGGRTLLRKYDgNWEMRAEEKgrQGC 529
                 **********9886....7888888888888899999888877....99***********************************9999***987779** PP

        GRAS 358 lvlgWkdrpLvsvSaWr 374
                 ++l+Wk++p+ ++S W+
  RWR75187.1 530 ICLCWKGKPVSFCSLWK 546
                 ****************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    
MLNPSSFSPP PFHSYSPLIM PIEEEPEPEP PTSAHILDWL EDSISFPFLN EPYAAAAAAA  60
ADDDGINSYN QWWDQQDDED NLINASSINS SPTALPNPSP PQPESSKKRK PPNNATAKKQ  120
SSGKTNGNHS GGGGGGGNKD ARWAEQLLNP CASAIGAGNL SRVRHLLYVL HELASLSGDA  180
NYRLAAHGLR ALTNHLSSSG SVSVPGVSID RPPTFATTEP RLFQNSLIKF HELSPWFSFP  240
NSLANASILQ TLTTLDPSQQ NSSSSSSSRQ RNLHIVDIGV SHGIQWPTLL ESLANRPGGP  300
PPLVRLTVVA AAGTPASFSS GPPGDDYPSR LLRFAKRNNL NLQIDRVESH PLQTLTAEAL  360
GVASRGEGEG EGEKEETLII CAQFRLHQLP HEDPDDRTEF LRRMRDLEPD LVVLTENDGD  420
CSCSCCCGDF ALGFPRRVEF AWKLLDSTSA AFKGRECQER RVIEGEAATA LSSAAEMNEG  480
KAGWCERMRR LGFIGEGFGE EAVEGGRTLL RKYDGNWEMR AEEKGRQGCI CLCWKGKPVS  540
FCSLWKLPTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.11e-112GRAS family protein