PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR75126.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family BBR-BPC
Protein Properties Length: 319aa    MW: 34663.6 Da    PI: 9.3667
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR75126.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind301.82.6e-9212841301
   GAGA_bind   1 mdddgsre....rnkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkl 81 
                 mdddg       rn+gyye+    k nlglqlmss++ erd+k+    r++ +     ++ + +r+         m+f  r+++++        r+ +l
  RWR75126.1   1 MDDDGGLGglgiRNWGYYEQP--TKGNLGLQLMSSVTaERDQKPllggRDAGV---MLNGGFMHREcgvpestvpMDF-IRESWISP-------RE-RL 85 
                 777766555667*******99..899**********99******985555444...6678888899899999999***.8999**99.......33.33 PP

   GAGA_bind  82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180
                 l+    +        +++  lsg + ++++         +++ ++++ee+   +++ee +   k+ +  kkr++++  k++kakk kk+s++sk++++ 
  RWR75126.1  86 LHGFSGH--------QNYPFLSGGSGAHNSPY-------PPPPDIPKEEH---PQVEEVEVGGKNDAPLKKRANGRACKAPKAKKSKKSSSASKEDSNC 166
                 3333322........24788999999998887.......77777887774...5555566677777888889999999999999999988888887777 PP

   GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279
                 +     + ++ k++++ +ngv++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP stkrrgaRiagrKmSqgafkk+LekLaaeGy++
  RWR75126.1 167 SV---PRPKPIKNTGVIINGVDIDISGIPIPICSCTGTPQQCYRWGCGGWQSACCTTSISMYPLPLSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNI 262
                 77...3678899*************************************************************************************** PP

   GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301
                 snp+DLk+hWAkHGtnkfvtir
  RWR75126.1 263 SNPIDLKTHWAKHGTNKFVTIR 284
                 *********************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    
MDDDGGLGGL GIRNWGYYEQ PTKGNLGLQL MSSVTAERDQ KPLLGGRDAG VMLNGGFMHR  60
ECGVPESTVP MDFIRESWIS PRERLLHGFS GHQNYPFLSG GSGAHNSPYP PPPDIPKEEH  120
PQVEEVEVGG KNDAPLKKRA NGRACKAPKA KKSKKSSSAS KEDSNCSVPR PKPIKNTGVI  180
INGVDIDISG IPIPICSCTG TPQQCYRWGC GGWQSACCTT SISMYPLPLS TKRRGARIAG  240
RKMSQGAFKK VLEKLAAEGY NISNPIDLKT HWAKHGTNKF VTIRHLLPTL LSSFPFPMAL  300
YTAADFGDPP LLLQSQYSQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.15e-78BBR-BPC family protein