PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWR75126.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
|
||||||||
Family | BBR-BPC | ||||||||
Protein Properties | Length: 319aa MW: 34663.6 Da PI: 9.3667 | ||||||||
Description | BBR-BPC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GAGA_bind | 301.8 | 2.6e-92 | 1 | 284 | 1 | 301 |
GAGA_bind 1 mdddgsre....rnkgyyepaaslkenlglqlmssia.erdaki....rernlalsekkaavaerd.........maflqrdkalaernkalverdnkl 81 mdddg rn+gyye+ k nlglqlmss++ erd+k+ r++ + ++ + +r+ m+f r+++++ r+ +l RWR75126.1 1 MDDDGGLGglgiRNWGYYEQP--TKGNLGLQLMSSVTaERDQKPllggRDAGV---MLNGGFMHREcgvpestvpMDF-IRESWISP-------RE-RL 85 777766555667*******99..899**********99******985555444...6678888899899999999***.8999**99.......33.33 PP GAGA_bind 82 lalllvenslasalpvgvqvlsgtksidslqqlsepqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkk 180 l+ + +++ lsg + ++++ +++ ++++ee+ +++ee + k+ + kkr++++ k++kakk kk+s++sk++++ RWR75126.1 86 LHGFSGH--------QNYPFLSGGSGAHNSPY-------PPPPDIPKEEH---PQVEEVEVGGKNDAPLKKRANGRACKAPKAKKSKKSSSASKEDSNC 166 3333322........24788999999998887.......77777887774...5555566677777888889999999999999999988888887777 PP GAGA_bind 181 esaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydl 279 + + ++ k++++ +ngv++D+s++P+P+CsCtG+++qCY+WG+GGWqSaCCtt+iS+yPLP stkrrgaRiagrKmSqgafkk+LekLaaeGy++ RWR75126.1 167 SV---PRPKPIKNTGVIINGVDIDISGIPIPICSCTGTPQQCYRWGCGGWQSACCTTSISMYPLPLSTKRRGARIAGRKMSQGAFKKVLEKLAAEGYNI 262 77...3678899*************************************************************************************** PP GAGA_bind 280 snpvDLkdhWAkHGtnkfvtir 301 snp+DLk+hWAkHGtnkfvtir RWR75126.1 263 SNPIDLKTHWAKHGTNKFVTIR 284 *********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 319 aa Download sequence |
MDDDGGLGGL GIRNWGYYEQ PTKGNLGLQL MSSVTAERDQ KPLLGGRDAG VMLNGGFMHR 60 ECGVPESTVP MDFIRESWIS PRERLLHGFS GHQNYPFLSG GSGAHNSPYP PPPDIPKEEH 120 PQVEEVEVGG KNDAPLKKRA NGRACKAPKA KKSKKSSSAS KEDSNCSVPR PKPIKNTGVI 180 INGVDIDISG IPIPICSCTG TPQQCYRWGC GGWQSACCTT SISMYPLPLS TKRRGARIAG 240 RKMSQGAFKK VLEKLAAEGY NISNPIDLKT HWAKHGTNKF VTIRHLLPTL LSSFPFPMAL 300 YTAADFGDPP LLLQSQYSQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14685.1 | 5e-78 | BBR-BPC family protein |