PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74909.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 389aa MW: 43237.9 Da PI: 7.3881

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74909.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.9	4.2e-17	122	167	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l ++v+q+G+ +W++Ia+++ gR++k+c++rw++ RWR74909.1 122 RGHWRPAEDAKLRELVAQHGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 167 899***************************.*********996 PP
2	Myb_DNA-binding	57.5	3.2e-18	174	217	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 r ++T+eE+e+l+ a++++G++ W+ Iar ++ gRt++ +k++w+ RWR74909.1 174 RRAFTEEEEERLLAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 217 678*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MSLQQLQSSG HQVGDCEGFR RYRELSFFPP GVFGSSRDAD SKRTEMGFQV LTPSSLEQKR 60 DWSYLAFEGR DQKRSDGGAG GFIGNEKNEE GLGSFGQGEE EDEEKLLAEK DHESGRSKLC 120 ARGHWRPAED AKLRELVAQH GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFTEE 180 EEERLLAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKHREQSSAY RRRKAPSSSQ 240 VLPQRVEMMN TGNACSDSTI SSTKDESAST SGLSLNSSSG RILPGAFTGF SPPEQHQPFE 300 FIKGSYVKMA TSANGCYVKC DSSSNAFHHS GPMMMMGVDP SGYSDSNSDI SATESVANNP 360 NKLHAYGESD HGRQNISLPF IDFLGVGAT

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MSLQQLQSSG HQVGDCEGFR RYRELSFFPP GVFGSSRDAD SKRTEMGFQV LTPSSLEQKR  60
DWSYLAFEGR DQKRSDGGAG GFIGNEKNEE GLGSFGQGEE EDEEKLLAEK DHESGRSKLC  120
ARGHWRPAED AKLRELVAQH GPQNWNLIAE KLEGRSGKSC RLRWFNQLDP RINRRAFTEE  180
EEERLLAAHR LYGNKWAMIA RLFPGRTDNA VKNHWHVIMA RKHREQSSAY RRRKAPSSSQ  240
VLPQRVEMMN TGNACSDSTI SSTKDESAST SGLSLNSSSG RILPGAFTGF SPPEQHQPFE  300
FIKGSYVKMA TSANGCYVKC DSSSNAFHHS GPMMMMGVDP SGYSDSNSDI SATESVANNP  360
NKLHAYGESD HGRQNISLPF IDFLGVGAT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69560.1	2e-69	MYB family protein