PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74835.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB

Protein Properties

Length: 546aa MW: 59626.6 Da PI: 5.1243

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74835.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.1	4.2e-18	39	86	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT Ed +lvd+vk++G g+W+++ ++ g+ R++k+c++rw ++l RWR74835.1 39 KGPWTSTEDAILVDYVKKHGEGNWNAVQKHSGLLRCGKSCRLRWANHL 86 79****************************99********9986 PP
2	Myb_DNA-binding	52.8	9e-17	92	135	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++T+eE+ l++++++++G++ W++ a++++ gRt++++k++w++ RWR74835.1 92 KGAFTPEEERLIIELHAKMGNK-WARMAAHLP-GRTDNEIKNYWNT 135 799*****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 546 aa Download sequence
MSHTTTNDSD DGMPRDRINS PSIDEGSSGG SGGAGVLKKG PWTSTEDAIL VDYVKKHGEG 60 NWNAVQKHSG LLRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIIELHAKM GNKWARMAAH 120 LPGRTDNEIK NYWNTRIKRL QRAGLPLYPP DICLQALNEG HQNQNVSELS GSDARNNDLL 180 QRNNYDIPDV VFDNYKACQG PLSYAAAFPD ISGSGIMTQA LGSSQNYIIM PPTVHQTKRP 240 RESDALFPGF LGSVSNGLPS FDPSQIESFK KICRPFGLEL PYDPYPNSKN PAPFSGSTTG 300 SHAPLNGNIS TSKPLSKAVK LELPSLQYLE TDTNYWGTCP PPPLETMDAY LQSPPAMQAQ 360 SDCPPPWNSG LLEEVIHGPR VKNQSSEKSL NSSVTPADPI DNSSLTPADA MDKLTLELQE 420 TEWGDYGDPI SPLGCSASSV FSECTPISVS SLDETAPVIV FHGGGKEDST RLDKHMKFLR 480 PDALLGSDCL EQDFDYAKDL AALLSEDFCN DYKYAASGTS TFSQGWGLGS FPWNNMPAVC 540 QMSEHP

Sequence ? help Back to Top

Protein Sequence Length: 546 aa Download sequence

MSHTTTNDSD DGMPRDRINS PSIDEGSSGG SGGAGVLKKG PWTSTEDAIL VDYVKKHGEG  60
NWNAVQKHSG LLRCGKSCRL RWANHLRPNL KKGAFTPEEE RLIIELHAKM GNKWARMAAH  120
LPGRTDNEIK NYWNTRIKRL QRAGLPLYPP DICLQALNEG HQNQNVSELS GSDARNNDLL  180
QRNNYDIPDV VFDNYKACQG PLSYAAAFPD ISGSGIMTQA LGSSQNYIIM PPTVHQTKRP  240
RESDALFPGF LGSVSNGLPS FDPSQIESFK KICRPFGLEL PYDPYPNSKN PAPFSGSTTG  300
SHAPLNGNIS TSKPLSKAVK LELPSLQYLE TDTNYWGTCP PPPLETMDAY LQSPPAMQAQ  360
SDCPPPWNSG LLEEVIHGPR VKNQSSEKSL NSSVTPADPI DNSSLTPADA MDKLTLELQE  420
TEWGDYGDPI SPLGCSASSV FSECTPISVS SLDETAPVIV FHGGGKEDST RLDKHMKFLR  480
PDALLGSDCL EQDFDYAKDL AALLSEDFCN DYKYAASGTS TFSQGWGLGS FPWNNMPAVC  540
QMSEHP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06100.3	1e-115	MYB family protein