PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74639.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 593aa MW: 63891 Da PI: 5.7436

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74639.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.7	1e-08	401	448	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq RWR74639.1 401 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 448 8***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 593 aa Download sequence
MEKENFSMND NSPSLSYAAS STPNWQSSSG MDVQLGELNC ASEQLPPCFL NLNWENSMDQ 60 NVPFESALSS IVSSPAASNA AVPTESVVIR ELIGRLGSIC NSGEISPTSQ TLGGSGASYI 120 GGNNNSTNTS CYSTPLNSPP KLNLSIMDHQ VRGNLPISGN SMPSHPSLAP FSADPGFAER 180 AAKFSCFSNR NFGGLLGQFG LPEAELPNRY ARRAETGKLS RVSSSQSLKA GSQMSVFDNK 240 DVALPDGFEA EMQSSSALER KFNRLSRPST PDNVEFCNAH EESSISGQNI GGESASKGLN 300 ETNGRKRKAA PKNKPKDLPS SPPSAKDAKA VEDVDSNAKR CKPAEASGNE NDGVKLSGEE 360 NSSANAGAGA QRQSKENSKP PEPPKQDYIH VRARRGQATD SHSLAERVRR EKISERMKFL 420 QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNME TLLSKDIIQP 480 RGSLPPTMYP LDPSAPTFSY VQQPQLGPPT GMASNGFDTQ SSVNPLDATL RRALSMQLPA 540 MDGYADASSQ LTNYWEDDLQ SVVQMGFGQN HETAFQSQNC HGPLPTGHMK IEL

Sequence ? help Back to Top

Protein Sequence Length: 593 aa Download sequence

MEKENFSMND NSPSLSYAAS STPNWQSSSG MDVQLGELNC ASEQLPPCFL NLNWENSMDQ  60
NVPFESALSS IVSSPAASNA AVPTESVVIR ELIGRLGSIC NSGEISPTSQ TLGGSGASYI  120
GGNNNSTNTS CYSTPLNSPP KLNLSIMDHQ VRGNLPISGN SMPSHPSLAP FSADPGFAER  180
AAKFSCFSNR NFGGLLGQFG LPEAELPNRY ARRAETGKLS RVSSSQSLKA GSQMSVFDNK  240
DVALPDGFEA EMQSSSALER KFNRLSRPST PDNVEFCNAH EESSISGQNI GGESASKGLN  300
ETNGRKRKAA PKNKPKDLPS SPPSAKDAKA VEDVDSNAKR CKPAEASGNE NDGVKLSGEE  360
NSSANAGAGA QRQSKENSKP PEPPKQDYIH VRARRGQATD SHSLAERVRR EKISERMKFL  420
QDLVPGCNKV TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRLDFNME TLLSKDIIQP  480
RGSLPPTMYP LDPSAPTFSY VQQPQLGPPT GMASNGFDTQ SSVNPLDATL RRALSMQLPA  540
MDGYADASSQ LTNYWEDDLQ SVVQMGFGQN HETAFQSQNC HGPLPTGHMK IEL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	4e-80	bHLH family protein