PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR74119.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 723aa MW: 77033.2 Da PI: 7.0987

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR74119.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.1	2.3e-09	204	232	1	29
TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIar 29 r+rWT+eEd l+ av++ G g+W+ I + RWR74119.1 204 RKRWTPEEDMELIAAVQKCGEGNWANILK 232 89************************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 723 aa Download sequence
MFETKKKKRK VFIREDDIPM TLRRYSATTL LTLLQEVAQF PGVKIDWNLL VKKTSTGISN 60 AREYQMVWRH LAYRDILLEK LEEGDEPFDD DSDLEVELEP SPAVNGEAMT EAAACVKVLI 120 ASGSPSESCP SNRAIVEAPL TINIPNGQSS RNPSENPQRP HSAQGTNITI PVSVQKQPLP 180 SVPSLEGLEG NGSASGNLQQ RKRRKRWTPE EDMELIAAVQ KCGEGNWANI LKGDFKHDRS 240 ASQLSQRWSI IRKNKANLTT SIVSNSTGGA LTEAQLAARQ AVSMALNMPM KGSLLATSSV 300 GQDAFFYSPN FIYHLGVHSV AAAANLSSTN GNSSTAPAAA SDASLLYTPL SEVSTKAPVT 360 SSPQILQQCQ QAPSQTPLPK VASSSNPAPP KPRPTSKRLS APAKNLPTGP NPLIQAAAVA 420 AGARIATPST AASLFKAAQS RNAVHIRQGG SVPQSSMPVT RPLGTNTMTS LPPNVHYIRT 480 SLMPHPSTYS GTMPSGPRPS NVQGGSGRSP LMIQPPPMGS TTSSNQQAVS ECKSTSLTCG 540 NSDSKKTSVS TVPAGIAAAS EDKNAKEKKL ENTGEVLKEQ VIEQASLTNS KTDGNHHSVV 600 DGAGENQNPV LRQTQVAANT TPGESLIEVD KTVDPTNREA GDEQIVGNIR TGENQSVTEK 660 MASSPNNEEL VDQIVINKTD ENQEKQKVLP ISDLEENMSL VNAGHENQNV PDNQIGSPNT 720 GEA

Sequence ? help Back to Top

Protein Sequence Length: 723 aa Download sequence

MFETKKKKRK VFIREDDIPM TLRRYSATTL LTLLQEVAQF PGVKIDWNLL VKKTSTGISN  60
AREYQMVWRH LAYRDILLEK LEEGDEPFDD DSDLEVELEP SPAVNGEAMT EAAACVKVLI  120
ASGSPSESCP SNRAIVEAPL TINIPNGQSS RNPSENPQRP HSAQGTNITI PVSVQKQPLP  180
SVPSLEGLEG NGSASGNLQQ RKRRKRWTPE EDMELIAAVQ KCGEGNWANI LKGDFKHDRS  240
ASQLSQRWSI IRKNKANLTT SIVSNSTGGA LTEAQLAARQ AVSMALNMPM KGSLLATSSV  300
GQDAFFYSPN FIYHLGVHSV AAAANLSSTN GNSSTAPAAA SDASLLYTPL SEVSTKAPVT  360
SSPQILQQCQ QAPSQTPLPK VASSSNPAPP KPRPTSKRLS APAKNLPTGP NPLIQAAAVA  420
AGARIATPST AASLFKAAQS RNAVHIRQGG SVPQSSMPVT RPLGTNTMTS LPPNVHYIRT  480
SLMPHPSTYS GTMPSGPRPS NVQGGSGRSP LMIQPPPMGS TTSSNQQAVS ECKSTSLTCG  540
NSDSKKTSVS TVPAGIAAAS EDKNAKEKKL ENTGEVLKEQ VIEQASLTNS KTDGNHHSVV  600
DGAGENQNPV LRQTQVAANT TPGESLIEVD KTVDPTNREA GDEQIVGNIR TGENQSVTEK  660
MASSPNNEEL VDQIVINKTD ENQEKQKVLP ISDLEENMSL VNAGHENQNV PDNQIGSPNT  720
GEA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	5	10	KKKKRK
2	6	11	KKKRKV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.2	7e-86	MYB_related family protein