PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73500.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

HB-other

Protein Properties

Length: 352aa MW: 39651.4 Da PI: 10.3078

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73500.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57.4	2.4e-18	141	199	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r +L +++ +++ +q+kvWFqNrR +ek+ RWR73500.1 141 KYVRYTPEQVEALEKLYHDCPKPSSIRRHQLIRECpilsHIEPKQIKVWFQNRRCREKQ 199 5679*****************************************************97 PP
2	bZIP_1	21.4	5.6e-07	193	238	18	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 18 rrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 rr+R++ ++e +L+ +L+a Nk L +e+++l+k+v++l se+ RWR73500.1 193 RRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVSEN 238 9*****************************************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MTWHLIFPKY PPPQQARSAI RNQGNIVNTT QTKGGGAESE FLIERSLVRT KSANRLLLLI 60 VVFVWLKGSV VGSEATDRDR NRNRNRNPIL GVESSGSSVS VKAQGRDREE DREISRKRKI 120 FEGMMAVSPS KEAKLGMDPG KYVRYTPEQV EALEKLYHDC PKPSSIRRHQ LIRECPILSH 180 IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVSENGY 240 FRQKTQNTAL ATADTSCESV VTSGQHHLTP QHPPRDATPA GLFSIAEETL TEFLSKATGT 300 AVEWVQMPGM KLSKWAAALL SCKLPLISAA GMCPGNSISD SVFFFFFSNP DI

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MTWHLIFPKY PPPQQARSAI RNQGNIVNTT QTKGGGAESE FLIERSLVRT KSANRLLLLI  60
VVFVWLKGSV VGSEATDRDR NRNRNRNPIL GVESSGSSVS VKAQGRDREE DREISRKRKI  120
FEGMMAVSPS KEAKLGMDPG KYVRYTPEQV EALEKLYHDC PKPSSIRRHQ LIRECPILSH  180
IEPKQIKVWF QNRRCREKQR KEASRLQAVN RKLTAMNKLL MEENDRLQKQ VSQLVSENGY  240
FRQKTQNTAL ATADTSCESV VTSGQHHLTP QHPPRDATPA GLFSIAEETL TEFLSKATGT  300
AVEWVQMPGM KLSKWAAALL SCKLPLISAA GMCPGNSISD SVFFFFFSNP DI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52150.3	1e-106	HD-ZIP family protein