PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73265.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 446aa MW: 49504.7 Da PI: 4.662

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73265.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.4	8.2e-11	206	253	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h +Er+RR+++N+++ Lr+l+Pk + +++ a+iL A+e++k+Lq RWR73265.1 206 SKHYVAERKRREKLNKRLYFLRSLVPKiS------RMDRASILGDAIEFVKELQ 253 57999********************66......9***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence
MRKLQVPEEG HITEFVMAHC SPSWEQEAML AGNGRADTGL DGPCLNNGFT GDNPIDHQLE 60 PFPSNGYETE SNTKSWVPPT NDNSSLPRDL SVDQIRLCNS SLNFFGASLP PTDDRPKNDI 120 FLEGSLDSIH KPHSFSYSAM DDGFPDTSAL QQSIGIVTPN LHPSLAESSV TKELGQDKDS 180 IKQDMGQSNS ISDCSDQMEE DDGYQSKHYV AERKRREKLN KRLYFLRSLV PKISRMDRAS 240 ILGDAIEFVK ELQKQVKDLQ DELEETQVGG EQKENCNNND NVQLEVPNQN VASHGDGESP 300 NGLKTGMADQ ETRCSSSNKT GDFVKHNHDL ISTDKALQME VQVEASQVDG NELFLKVFWE 360 QKPARFVRLM EAINSLGLEV TNANVTTFRG LVLNVFKVKK RENEVVEADQ ARDSLLELIC 420 NPKGGRPESG CIGENGGSGY DHHHHS

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence

MRKLQVPEEG HITEFVMAHC SPSWEQEAML AGNGRADTGL DGPCLNNGFT GDNPIDHQLE  60
PFPSNGYETE SNTKSWVPPT NDNSSLPRDL SVDQIRLCNS SLNFFGASLP PTDDRPKNDI  120
FLEGSLDSIH KPHSFSYSAM DDGFPDTSAL QQSIGIVTPN LHPSLAESSV TKELGQDKDS  180
IKQDMGQSNS ISDCSDQMEE DDGYQSKHYV AERKRREKLN KRLYFLRSLV PKISRMDRAS  240
ILGDAIEFVK ELQKQVKDLQ DELEETQVGG EQKENCNNND NVQLEVPNQN VASHGDGESP  300
NGLKTGMADQ ETRCSSSNKT GDFVKHNHDL ISTDKALQME VQVEASQVDG NELFLKVFWE  360
QKPARFVRLM EAINSLGLEV TNANVTTFRG LVLNVFKVKK RENEVVEADQ ARDSLLELIC  420
NPKGGRPESG CIGENGGSGY DHHHHS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	212	217	ERKRRE
2	213	218	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16910.1	2e-47	bHLH family protein