PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73135.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 545aa MW: 59847.9 Da PI: 5.1967

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73135.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	9.8e-12	357	399	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL AveY+k+L RWR73135.1 357 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAVEYLKEL 399 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 545 aa Download sequence
MLSNVNAGAW MGEGEEEGGG GASWSRTSQK QDCLGLYSFK SLLEEGEAQD WYINTNSNPS 60 QNGFQTIQNH QEIKDIAFPS DPNQENVLFQ HMDSSSSCSP SPVFNFDPSQ PFFPPKNCLH 120 SSSTSLLGAF SNNAFEGGFD LSGDSAGFLA GPSSNSSVLL NRGCGVLPVL GDLGSNCQMG 180 ALDFNSETHF PNTRLLPLSE NAGFDSQGFW GFDGSAAGSA PLFQNRPKTL RPLEILPPVG 240 AQPTLFQKRA ALRHNTGENG RNSGLYCSVA RGNLIRRERS SSSMERRDWD EDEEKKMIMI 300 DEENDLDDAS MNYDSDDART GSAKVEEENV KSLNADRSIT GVDQKGKRKG LPAKNLMAER 360 RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAVEYLKELL ERINNLHNEL ESSPSSTSLS 420 ASTSFHPLTP TPLTLPSRVK EELCPSSLPS PNGQPARVEV RVREGRAVNI HMFCARRPGL 480 LLSTIRALDR LGLDIQQAVI SCFNGFALDV FRAEQCKEGA DVLPEEIKAE LLHSAGFHET 540 MLLDH

Sequence ? help Back to Top

Protein Sequence Length: 545 aa Download sequence

MLSNVNAGAW MGEGEEEGGG GASWSRTSQK QDCLGLYSFK SLLEEGEAQD WYINTNSNPS  60
QNGFQTIQNH QEIKDIAFPS DPNQENVLFQ HMDSSSSCSP SPVFNFDPSQ PFFPPKNCLH  120
SSSTSLLGAF SNNAFEGGFD LSGDSAGFLA GPSSNSSVLL NRGCGVLPVL GDLGSNCQMG  180
ALDFNSETHF PNTRLLPLSE NAGFDSQGFW GFDGSAAGSA PLFQNRPKTL RPLEILPPVG  240
AQPTLFQKRA ALRHNTGENG RNSGLYCSVA RGNLIRRERS SSSMERRDWD EDEEKKMIMI  300
DEENDLDDAS MNYDSDDART GSAKVEEENV KSLNADRSIT GVDQKGKRKG LPAKNLMAER  360
RRRKKLNDRL YMLRSVVPKI SKMDRASILG DAVEYLKELL ERINNLHNEL ESSPSSTSLS  420
ASTSFHPLTP TPLTLPSRVK EELCPSSLPS PNGQPARVEV RVREGRAVNI HMFCARRPGL  480
LLSTIRALDR LGLDIQQAVI SCFNGFALDV FRAEQCKEGA DVLPEEIKAE LLHSAGFHET  540
MLLDH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	347	365	KRKGLPAKNLMAERRRRKK
2	359	366	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	1e-100	bHLH family protein