PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR73091.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

FAR1

Protein Properties

Length: 780aa MW: 89652.1 Da PI: 7.0563

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR73091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	49.8	1.1e-15	51	139	1	89
FAR1 1 kfYneYAkevGFsvrkskskks..krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek..dgkwevtkleleHnHel 89 kfY+ YAk+vGF +++++s+ + +++ tf C +eg+++e ++ +++r++ r+gCka++++k++ d w + + +eHnH++ RWR73091.1 51 KFYRLYAKSVGFGTKVHNSHCRviGGKRQLWYITFACEREGFKREMQHV----ENPRPNCRVGCKAEMRIKRKGrnDCMWICYFVATEHNHDV 139 6************999988866566678999*******98776....99*************9877889**********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 780 aa Download sequence
MMDEATISNC GAISSTGEDE GNVAHLAASE DNKSLAPYVG MEFQSHEEAQ KFYRLYAKSV 60 GFGTKVHNSH CRVIGGKRQL WYITFACERE GFKREMQHVE NPRPNCRVGC KAEMRIKRKG 120 RNDCMWICYF VATEHNHDVG SLLPDLIRAK RISDQRKIAR AHKTMIQRSK VKQLSVETED 180 MDKLNDRQKE VKNFIDGDVN AIQKLFAERS SKNPSLFYQM EVNKEGHLNV FWVDGRCRAS 240 YNYFGDVITF DTTYLTNKYN MPLALFVGVN HHGQSVLLGC GLLANEATET FTWLFQTWLK 300 AMGWPPISII TDHSPSIQAA VKIVFPEIRY RLCLSHIMKR RNEMFSGILN KGEVMSMMSK 360 CVYDSFKVED FVRDWNDMIK KYSLEKNEWL QSLYEVRELW VPTYLKGTFF AGMQTTYRSE 420 GVDHYFDGYV HQKSTLSEFL EQHDRALQDH YQKEIEADFA DVHSNPILRI DHCFEVQGAS 480 FYTKEIFQKF QSEVLCIGNC VITIKDVDGA ITTYAVKDMI TRENGVVERK EYEVTFDALE 540 IKVSCICCMF EFQGILCNHA LSVLYAVEVT QIPSCYMLQR WRKDFKRTHA LHGDREQTQV 600 NNAVDRFNDL WHRFIQFADE AATTTERYLF AVQALSEATN KLRHMGGCPN IDLRASASPN 660 LLSECSPQIS TFGNTCKAGE SNETNCMSKI LDLELEAEGG PLKTKRFKPH LETLRGKTRA 720 KNCSICKKPG HTRVTCEENQ VKSVQSTQLE QDDIEESLQL MGEVNFGGKN LQPVTFNYHF

Sequence ? help Back to Top

Protein Sequence Length: 780 aa Download sequence

MMDEATISNC GAISSTGEDE GNVAHLAASE DNKSLAPYVG MEFQSHEEAQ KFYRLYAKSV  60
GFGTKVHNSH CRVIGGKRQL WYITFACERE GFKREMQHVE NPRPNCRVGC KAEMRIKRKG  120
RNDCMWICYF VATEHNHDVG SLLPDLIRAK RISDQRKIAR AHKTMIQRSK VKQLSVETED  180
MDKLNDRQKE VKNFIDGDVN AIQKLFAERS SKNPSLFYQM EVNKEGHLNV FWVDGRCRAS  240
YNYFGDVITF DTTYLTNKYN MPLALFVGVN HHGQSVLLGC GLLANEATET FTWLFQTWLK  300
AMGWPPISII TDHSPSIQAA VKIVFPEIRY RLCLSHIMKR RNEMFSGILN KGEVMSMMSK  360
CVYDSFKVED FVRDWNDMIK KYSLEKNEWL QSLYEVRELW VPTYLKGTFF AGMQTTYRSE  420
GVDHYFDGYV HQKSTLSEFL EQHDRALQDH YQKEIEADFA DVHSNPILRI DHCFEVQGAS  480
FYTKEIFQKF QSEVLCIGNC VITIKDVDGA ITTYAVKDMI TRENGVVERK EYEVTFDALE  540
IKVSCICCMF EFQGILCNHA LSVLYAVEVT QIPSCYMLQR WRKDFKRTHA LHGDREQTQV  600
NNAVDRFNDL WHRFIQFADE AATTTERYLF AVQALSEATN KLRHMGGCPN IDLRASASPN  660
LLSECSPQIS TFGNTCKAGE SNETNCMSKI LDLELEAEGG PLKTKRFKPH LETLRGKTRA  720
KNCSICKKPG HTRVTCEENQ VKSVQSTQLE QDDIEESLQL MGEVNFGGKN LQPVTFNYHF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G52520.1	1e-126	FAR1 family protein