PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWR72851.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 244aa MW: 27538.4 Da PI: 11.3146 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 98.2 | 3.3e-31 | 170 | 220 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+iifs++gklyey++ RWR72851.1 170 KRIENKINRQVTFSKRRMGLLKKAHEISVLCDAEVALIIFSTKGKLYEYAT 220 79***********************************************86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence |
MPHSHDIQVI KQMKRKHSAP QWAPPVSPTD LVCPSVHRGS HTPPAPTCTT AHSLPKASPA 60 NDSTVASTNH KSTTFFPKTT PVFPNHLSPP KPLSPLPYIY PTNSKHRARL LLHHLLRLLL 120 LCLVLSPPQN LLHIGRPHTR IPTRLSEFLL LLLLLLLPFR KMGRGRVQLK RIENKINRQV 180 TFSKRRMGLL KKAHEISVLC DAEVALIIFS TKGKLYEYAT DSRYFLIFFS PNTPISHHSA 240 SVSR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 2e-35 | MIKC_MADS family protein |