PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72730.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

MYB_related

Protein Properties

Length: 707aa MW: 78489.2 Da PI: 10.5857

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	35.6	2.2e-11	17	67	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqky 47 +W+t+E++ll++av+++G+++W+ +a +++ + + + +c+ +++++ RWR72730.1 17 PWSTWEELLLACAVNRHGTKSWDFVAMEVQsrisspLLLNAHNCRRKYHDL 67 7*********************************99********975 PP

Sequence ? help Back to Top
Protein Sequence Length: 707 aa Download sequence
MAKPHQEIDH DLDLDHPWST WEELLLACAV NRHGTKSWDF VAMEVQSRIS SPLLLNAHNC 60 RRKYHDLERR FMTVDPQSNG GDHTTTTQEE KTVLWVQQLT KLRVAELKRD VQRSDLSIVS 120 LQQKVKKLKQ EQEYSLQEKE NENEKSDLHK CSNKIRGGAD EKTHGESEKS SPVDDVAKRI 180 SGIESDRESN FSDPKCKTSE IGPEAVRKPE EAAETAAGET DPVPGKPVGG EASYDGSSET 240 ARAANGEAAS IPVPDAGDSA EFPESVAESE GGGGERAGKE NSDVQSSASL SRKRQRRKAA 300 PGNSSGDEPD VDEVSPARKR LSVKSQRSHR LARLLEVIRS HKHCSVFERR LQSQESTNYR 360 NLIRQHVDLE MIKTKLDEGL YSNSSLQFFR DLLLLFNNTI VFFPKNSTES IAAIELRDII 420 SKKMITATRS RSKPISNQKP HPPSRKPSPP IQPLPKPNPN PSGPVAACRK RSSISVKAPL 480 RLPALEAKRS RPDVVKSDPQ RDEPDDNHPT KNLSKQRTRE RSSLRTRGAM GHINKSSKSS 540 NGALSNHVLS SNSIAREARS LREDPTDKKR KKMEKENAIV KKKNKMEKEN ATVKKNSVAN 600 FLNQMKRSSG SSSPPVDTLK ESVNGSGRGR GELGKGGKGG EVRRDQPVRN GSSGKKVQGK 660 GNPGRRSVGR PPKKVPPPQQ KMPPPPPRKA REKVEVEVKP HSKRPRR

Sequence ? help Back to Top

Protein Sequence Length: 707 aa Download sequence

MAKPHQEIDH DLDLDHPWST WEELLLACAV NRHGTKSWDF VAMEVQSRIS SPLLLNAHNC  60
RRKYHDLERR FMTVDPQSNG GDHTTTTQEE KTVLWVQQLT KLRVAELKRD VQRSDLSIVS  120
LQQKVKKLKQ EQEYSLQEKE NENEKSDLHK CSNKIRGGAD EKTHGESEKS SPVDDVAKRI  180
SGIESDRESN FSDPKCKTSE IGPEAVRKPE EAAETAAGET DPVPGKPVGG EASYDGSSET  240
ARAANGEAAS IPVPDAGDSA EFPESVAESE GGGGERAGKE NSDVQSSASL SRKRQRRKAA  300
PGNSSGDEPD VDEVSPARKR LSVKSQRSHR LARLLEVIRS HKHCSVFERR LQSQESTNYR  360
NLIRQHVDLE MIKTKLDEGL YSNSSLQFFR DLLLLFNNTI VFFPKNSTES IAAIELRDII  420
SKKMITATRS RSKPISNQKP HPPSRKPSPP IQPLPKPNPN PSGPVAACRK RSSISVKAPL  480
RLPALEAKRS RPDVVKSDPQ RDEPDDNHPT KNLSKQRTRE RSSLRTRGAM GHINKSSKSS  540
NGALSNHVLS SNSIAREARS LREDPTDKKR KKMEKENAIV KKKNKMEKEN ATVKKNSVAN  600
FLNQMKRSSG SSSPPVDTLK ESVNGSGRGR GELGKGGKGG EVRRDQPVRN GSSGKKVQGK  660
GNPGRRSVGR PPKKVPPPQQ KMPPPPPRKA REKVEVEVKP HSKRPRR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	568	572	KKRKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57980.1	5e-56	MYB_related family protein