PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72612.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

LBD

Protein Properties

Length: 306aa MW: 34933.4 Da PI: 9.8378

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72612.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	124.6	4.9e-39	5	104	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+C++dC lapyfp++qp++f+nvh+lFG+ n+lk+l++l+++++++a++s+ yeA++r r P++G++g+i++lq +++q++++l+++++ RWR72612.1 5 ACAACKYQRRECTADCRLAPYFPHDQPQHFKNVHRLFGVMNILKILAQLHPSQKRKAIRSIKYEAKIRNRYPIHGCLGIIRTLQAHIHQSQQQLDEVNA 103 7**********************************************************************************************9998 PP DUF260 100 e 100 + RWR72612.1 104 Q 104 7 PP
2	DUF260	119.9	1.4e-37	143	242	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rrkC++dC+lapyfpa+q+k+f+n+h+lFG+sn++k+lk+l+++++ dam+s+v +A++r + Pv+G++g+i lq ++++++el+++++ RWR72612.1 143 ACAACKYQRRKCNTDCPLAPYFPADQRKQFENAHRLFGVSNIIKILKQLDTSQKMDAMQSIVCQANIREKYPVHGCLGIICGLQVVIHRTQQELDAVNA 241 7**********************************************************************************************9998 PP DUF260 100 e 100 + RWR72612.1 242 Q 242 7 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MMRQACAACK YQRRECTADC RLAPYFPHDQ PQHFKNVHRL FGVMNILKIL AQLHPSQKRK 60 AIRSIKYEAK IRNRYPIHGC LGIIRTLQAH IHQSQQQLDE VNAQLSIYRE QHHQISPLPS 120 SQCSMTYGGK PQKMTVKGGS SQACAACKYQ RRKCNTDCPL APYFPADQRK QFENAHRLFG 180 VSNIIKILKQ LDTSQKMDAM QSIVCQANIR EKYPVHGCLG IICGLQVVIH RTQQELDAVN 240 AQLAICREQH HQISLSSSSS PFLPIAACAR IGEQFSYSLP KPLSKSTIQC RRCHRSFYRD 300 TPSFLE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47870.1	2e-45	LBD family protein