PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72567.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

bHLH

Protein Properties

Length: 461aa MW: 51073.3 Da PI: 6.5185

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72567.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.3	1.3e-08	375	415	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L RWR72567.1 375 ARQRRERISDRIRILQKLVPGG-----TKMDTASMLDEAANYLKFL 415 69****************87.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence
MDSLGWDNPQ TVTNPAVTPP HQWTHQQVQI RENSVESNAN HCGTVGKINY ADAFFDPSPL 60 LQGIKMCETS LNSDRVGEMI KQLDPALDSI NGASNLNIFQ WEDATKFAID AMLVKFGVDA 120 AWGEALAPQF CFSHLINRPY IINPTSGLME NLGATDGLQV INGTEAGNAQ FSNLETIEPL 180 DYMLLATNIN GKDDAIPVVF SDYKNLWNLS SNCAVSSGDS EKNTASYGST KEVRWPVSER 240 DNAIAPRARS SNTRPTWKRG DEEKVSNTTA NSHYLDFLQS GGSTTEGGFQ FLIDNQRKSK 300 KPRSEKHQSP STIDFRQPSS PCSSIDKPDS EAIAQMKAMI YRAAAFRPVN LGFEEMEKPK 360 RRNVRISSDP QTVAARQRRE RISDRIRILQ KLVPGGTKMD TASMLDEAAN YLKFLKSQVM 420 ALEALGHKVD PIYCTPSSLP FSPPSNHPNP MQSFFPYPKS T

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence

MDSLGWDNPQ TVTNPAVTPP HQWTHQQVQI RENSVESNAN HCGTVGKINY ADAFFDPSPL  60
LQGIKMCETS LNSDRVGEMI KQLDPALDSI NGASNLNIFQ WEDATKFAID AMLVKFGVDA  120
AWGEALAPQF CFSHLINRPY IINPTSGLME NLGATDGLQV INGTEAGNAQ FSNLETIEPL  180
DYMLLATNIN GKDDAIPVVF SDYKNLWNLS SNCAVSSGDS EKNTASYGST KEVRWPVSER  240
DNAIAPRARS SNTRPTWKRG DEEKVSNTTA NSHYLDFLQS GGSTTEGGFQ FLIDNQRKSK  300
KPRSEKHQSP STIDFRQPSS PCSSIDKPDS EAIAQMKAMI YRAAAFRPVN LGFEEMEKPK  360
RRNVRISSDP QTVAARQRRE RISDRIRILQ KLVPGGTKMD TASMLDEAAN YLKFLKSQVM  420
ALEALGHKVD PIYCTPSSLP FSPPSNHPNP MQSFFPYPKS T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	376	381	RQRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	7e-61	bHLH family protein