PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RWR72514.1
Organism
Cinnamomum micranthum f. kanehirae
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum
Family C3H
Protein Properties Length: 382aa    MW: 42522.5 Da    PI: 7.4992
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RWR72514.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.92e-09130151426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C+ f++ G Ck+Gd+C FaHg
  RWR72514.1 130 AACPEFRK-GSCKRGDSCEFAHG 151
                 78******.*************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    
MMLGEGTPPN PTVHVPPWSI YEDPTAGMIY HHHNQQHQQH PVSGVSPNAD YSPYLDVLNA  60
LQRYLPSSEP DSDETDESVD AYSCDEFRMY EFKVRRCARG RSHDWTECPY AHPGEKARRR  120
DPRKFHYSGA ACPEFRKGSC KRGDSCEFAH GVFECWLHPA RYRTQPCKDG TGCRRRVCFF  180
AHTPEQLRIL SQQSPNSSSL SPKSNISSNT SSAVDSYDGS PMRATRNTLI SSPTSTLLSP  240
PVSPPSDSPP LSPISPALRR TMQANSVNQV LASLRQLQLS KAKSIPASWG VQFGSPKVSG  300
VAPALFRSLP STPTAAKSRW VDVWERDCVV EEEEPMERVE SGRDLRAKIF EKLSKENLSE  360
KTDTETGTGV TPDVGWVSEL VK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.13e-97C3H family protein