PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72305.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

TCP

Protein Properties

Length: 437aa MW: 45709.4 Da PI: 7.3979

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72305.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126.3	3.3e-39	87	196	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg............ 88 +k++++++hTkv+gR+RR+R++a caar+F+L++eLG ++d++tieWLlqqa+pai+++tgt++++a+++ + s +ss+s+ ++ RWR72305.1 87 SAKRSSKDRHTKVDGRGRRIRMPAACAARVFQLTRELGNKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNLSVRSSGSSLAAPlskssphtfhga 185 5799****************************************************************9996555555555533333544544555555 PP TCP 89 ..........k 89 + RWR72305.1 186 lalaspdggiS 196 55555555442 PP

Sequence ? help Back to Top
Protein Sequence Length: 437 aa Download sequence
MEHADHGRGA ISSNNHSNNN NHNNNNNNNE DSSSSSQEQQ QLVPFEGRAP YMGSIQTAPP 60 QQQAGVDASL AISTKHDPTA SKQLAVSAKR SSKDRHTKVD GRGRRIRMPA ACAARVFQLT 120 RELGNKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN LSVRSSGSSL AAPLSKSSPH 180 TFHGALALAS PDGGISHLGF HHQQQPHYQQ HQLQHLLVSG EGGGGGGETP DSYMRKRLRE 240 DLFKEDQAQA AAAASASEAA AAASSPSTPR GTAPSSLLRP SNVVPGTMWA VAPAPPSGGA 300 FWMLPVTAGA TAPAVATARP SEQPIWTFPA AGQYGSSIQA PGGNTLQAPL QFMQRINIAG 360 GSPVPLTSML LQQPTMATSQ HLGLGLSETT NLGMLAALNA YNRGGSSLST EQNQQLDHTQ 420 VHHQGADSGE DHQTSSK

Sequence ? help Back to Top

Protein Sequence Length: 437 aa Download sequence

MEHADHGRGA ISSNNHSNNN NHNNNNNNNE DSSSSSQEQQ QLVPFEGRAP YMGSIQTAPP  60
QQQAGVDASL AISTKHDPTA SKQLAVSAKR SSKDRHTKVD GRGRRIRMPA ACAARVFQLT  120
RELGNKSDGE TIEWLLQQAE PAIIAATGTG TIPANFSTLN LSVRSSGSSL AAPLSKSSPH  180
TFHGALALAS PDGGISHLGF HHQQQPHYQQ HQLQHLLVSG EGGGGGGETP DSYMRKRLRE  240
DLFKEDQAQA AAAASASEAA AAASSPSTPR GTAPSSLLRP SNVVPGTMWA VAPAPPSGGA  300
FWMLPVTAGA TAPAVATARP SEQPIWTFPA AGQYGSSIQA PGGNTLQAPL QFMQRINIAG  360
GSPVPLTSML LQQPTMATSQ HLGLGLSETT NLGMLAALNA YNRGGSSLST EQNQQLDHTQ  420
VHHQGADSGE DHQTSSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	2e-48	TCP family protein