PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWR72034.1

Organism

Cinnamomum micranthum f. kanehirae

Taxonomic ID

337451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Magnoliidae; Laurales; Lauraceae; Cinnamomum; Cinnamomum micranthum

Family

Trihelix

Protein Properties

Length: 883aa MW: 97540.7 Da PI: 8.3566

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWR72034.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	66.6	5e-21	792	872	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W+ +e+++Lie+r e+++r+++ k ++ lWee+s++m e g++r+p qCk+ w +l ++y++ ++ ek++ + +pyfd+++ RWR72034.1 792 KWKPEEIRKLIELRGELDSRFQAVKGRMVLWEEISANMLEYGIQRTPGQCKSLWASLVQKYEENRTDEKGK-----KAWPYFDDVH 872 7***************************************************************99984.....67***987 PP

Sequence ? help Back to Top
Protein Sequence Length: 883 aa Download sequence
MASLSALSIC PCRITYQPKL RTFRVSSSLG PSSTVKGTGG SRLPRRRFQR SEGAGRSMED 60 SVKRKMEQFY EGSDGPPLRV LPIGGLGEIG MNCMLVGNYD RYILIDAGVM FPDYDELGVQ 120 KIIPDTTFIK KWSHKIEAVV ITHGHEDHIG ALPWLIKKRL KDFGIFVPSR LKIFKIKKRF 180 LAGPFEVEPI RVTHSIPDCC GLVLRCGDGT ILHTGDWKID ESPLDGKVFD REALEELSKE 240 GVTLMMSDST NVLSPGRSTS ETVVADALLR NISAAKGRVI TTQFASNIHR LGSVKAAADL 300 TGRKLVFVGM SLRTYLDAAW KDGKAPMDPS TLVKADDIDA YAPKDLLIVT TGSQAEPRAA 360 LNLASFGSSH SFKLGKDDVI LYSAKVIPGN ETRVMKMMNR ISELGPTIVM GKNEGLHTTG 420 HGYRGELEEV LQIVKPQHFL PIHGELLFLK EHELLGKSTG IRHTTVIKNG EMLGVSHLRS 480 RRVLSNGFIS LGKENFQFMY SDGDKAFGTS QELCIDERLR IASDGIIVVS MEILRPQNAD 540 HSLQTCIKGK IKITTRCLWL DKGKLLDALY KAAHAALSSC PINCPLPHIE RTVSEMLRKM 600 VRKYSSKRPE VIAIAVENTA GVLVDELRTR LAGKSSQDSF ELPALSKSFN AHLRSGGSSR 660 KLEEDGSDAA DFSEDLLKEE IEGIFTSFMC RILVSNQNGI VVHSFGENLE VTQLSSDGDT 720 ASSDSESPSS SASSEPNNFW WESLGVPQLQ KDENGSLLKE HIIGSVNGSS GEESTESAKA 780 QPKSSKTAKR NKWKPEEIRK LIELRGELDS RFQAVKGRMV LWEEISANML EYGIQRTPGQ 840 CKSLWASLVQ KYEENRTDEK GKKAWPYFDD VHQILSAGEV SKK

Sequence ? help Back to Top

Protein Sequence Length: 883 aa Download sequence

MASLSALSIC PCRITYQPKL RTFRVSSSLG PSSTVKGTGG SRLPRRRFQR SEGAGRSMED  60
SVKRKMEQFY EGSDGPPLRV LPIGGLGEIG MNCMLVGNYD RYILIDAGVM FPDYDELGVQ  120
KIIPDTTFIK KWSHKIEAVV ITHGHEDHIG ALPWLIKKRL KDFGIFVPSR LKIFKIKKRF  180
LAGPFEVEPI RVTHSIPDCC GLVLRCGDGT ILHTGDWKID ESPLDGKVFD REALEELSKE  240
GVTLMMSDST NVLSPGRSTS ETVVADALLR NISAAKGRVI TTQFASNIHR LGSVKAAADL  300
TGRKLVFVGM SLRTYLDAAW KDGKAPMDPS TLVKADDIDA YAPKDLLIVT TGSQAEPRAA  360
LNLASFGSSH SFKLGKDDVI LYSAKVIPGN ETRVMKMMNR ISELGPTIVM GKNEGLHTTG  420
HGYRGELEEV LQIVKPQHFL PIHGELLFLK EHELLGKSTG IRHTTVIKNG EMLGVSHLRS  480
RRVLSNGFIS LGKENFQFMY SDGDKAFGTS QELCIDERLR IASDGIIVVS MEILRPQNAD  540
HSLQTCIKGK IKITTRCLWL DKGKLLDALY KAAHAALSSC PINCPLPHIE RTVSEMLRKM  600
VRKYSSKRPE VIAIAVENTA GVLVDELRTR LAGKSSQDSF ELPALSKSFN AHLRSGGSSR  660
KLEEDGSDAA DFSEDLLKEE IEGIFTSFMC RILVSNQNGI VVHSFGENLE VTQLSSDGDT  720
ASSDSESPSS SASSEPNNFW WESLGVPQLQ KDENGSLLKE HIIGSVNGSS GEESTESAKA  780
QPKSSKTAKR NKWKPEEIRK LIELRGELDS RFQAVKGRMV LWEEISANML EYGIQRTPGQ  840
CKSLWASLVQ KYEENRTDEK GKKAWPYFDD VHQILSAGEV SKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63420.1	0.0	Trihelix family protein