PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDY12307.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | NF-YA | ||||||||
Protein Properties | Length: 202aa MW: 22373.6 Da PI: 6.9671 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 99.8 | 2.7e-31 | 110 | 166 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk +++rkpylheSRh hAlrR+Rg+gGrF RDY12307.1 110 EEPVFVNAKQYHGILRRRQSRAKAESEKKG-ARNRKPYLHESRHLHALRRARGCGGRF 166 69***************************9.**************************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 202 aa Download sequence |
MSSSTHDLSD NEADEQHQSE SQMLPLSANG ISHASIGTQN VQYATPPQLG TGHAVAPPTY 60 PYPDPYYRSI FAPYDAQTYP PQPYGGNPMV QLQLMGIQQA GVPLPTDTVE EPVFVNAKQY 120 HGILRRRQSR AKAESEKKGA RNRKPYLHES RHLHALRRAR GCGGRFLNSK KDENQQDEVA 180 STDESQSNIN LNSDKNEFAP SG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G30500.2 | 9e-60 | NF-YA family protein |