PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDY09209.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 144aa MW: 16626.2 Da PI: 8.4674 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 95.1 | 3.1e-30 | 80 | 130 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien + rqvtfskRr g+lKKA+ELSvLCdaevavi+fs++g+lye+ss RDY09209.1 80 KKIENATSRQVTFSKRRSGLLKKAYELSVLCDAEVAVIVFSQNGRLYEFSS 130 68***********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence |
MPLCWKWGLL ARVSGSGMFA TSFYHYLQFL LFFNFNLKIF GEFCSSLCSF TYAESKDLFL 60 CSHLQSASID EMVRGKIQMK KIENATSRQV TFSKRRSGLL KKAYELSVLC DAEVAVIVFS 120 QNGRLYEFSS SEYIFLHYSN SDMF |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G62165.4 | 5e-33 | MIKC_MADS family protein |