PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY08515.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 222aa MW: 24816.5 Da PI: 9.8669 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 72.9 | 2.7e-23 | 16 | 64 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ +n+sn qvtfskRr g++KKA+EL++LC+a+va+i+fs+ k++ + RDY08515.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALIVFSPGEKVFSF 64 5689***************************************999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence |
MSSAKKSRGR QKVEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGADV ALIVFSPGEK 60 VFSFGHPNVD AVIDRYLARA PPPNSGTMQF LEAHRMANLS GLNAQLTEMN NQLDEERKRH 120 EELARLKKGA QAQMWWALPI EEMSRAQLEQ YKVALEELKK HVPRLADGAM LQSAMKPPQF 180 YPGASSSSNI VHQPHPPSPQ ALLVSCRWHV STYPASDIPD MS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 4e-64 | M-type_MADS family protein |