PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY08399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 252aa MW: 28033.9 Da PI: 6.6237 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 63.4 | 2.5e-20 | 162 | 205 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 r en+ r t++kR+ngi+KKA+ELS+LCd+++ +++fs+tgk RDY08399.1 162 RLENTNGRLATYAKRKNGIMKKASELSILCDIDIILLMFSPTGK 205 6799999***********************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence |
MKRGTQFEVD AGNEQPGAAQ DAYVDVRVGD RDLVEEEIEE RVEMGVGVAR EERREHVQDA 60 AHGGARDAQG GEAPCHGFHG RERGGPESFE VHNLFAEYEA AVRGCGSLAT GASVLEELRR 120 EFHVVDDQDN VVVFCAFAFS VCLFINTMLI KGMGRVKLKI RRLENTNGRL ATYAKRKNGI 180 MKKASELSIL CDIDIILLMF SPTGKPSLCR GKRRFDSLSN YSLPFIIGHS NFEEVIAKFA 240 QLTPQERAKR CI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03060.2 | 8e-26 | M-type_MADS family protein |