PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDY02151.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 699aa MW: 76192.2 Da PI: 6.2063

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDY02151.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.3e-07	275	295	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RDY02151.1 275 PCPDFRK-GACRRGDMCEYAHG 295 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 699 aa Download sequence
MNHFSVDTED SFASLLELAA NNDVEGFKRL IECDPSSMDE VGLWYGRRKG SKQMVNEQRT 60 PLMVAATYGS IGIMKLILSL SEVDVNRPCG FDKSTALHCA ASGGAENAVD AVRLLLEAGA 120 DPNSVDANGH RPGDVIAFPP KLEHVKNSLE ELLQTDDSIA GCNLRVITTS SNAYSPPLST 180 SPDIGSPSAA DFQLKLKSND VPVSSASEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP 240 CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW 300 LHPAQYRTRL CKDGTNCSRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSTS SAMDFAAAMN 360 MLPGSPSSMS VMSPSPFTPP MSPSANGISH SSVAWPQPNI PALHLPGSNF QSSRLRSSLN 420 ARDIPMDDFD LLHDYDQQQQ LLNELSCLSP QPINSNTLNR SGRMKPLTPS NLDDLFSAES 480 SSPRYADPTL TSAVFSPTHK SAVLNQFQQQ QSLLAPVNTN FSSKNVEHPL LQASFGVQAS 540 GRMSPRNVEP ISPMGSRISM LAQREKQQFR SLSSRELGSN SAVAAAAAAS ANSWSKWGSP 600 NGKMDWSVGA DEVGKLRRSS SFELGNNGEE PDLSWVQSLV KESPTEIKDK LATSVSSVAA 660 AGSSSEVSNM NTQRDTVDPA VLGAWFEQMQ LDHLVAQQN

Sequence ? help Back to Top

Protein Sequence Length: 699 aa Download sequence

MNHFSVDTED SFASLLELAA NNDVEGFKRL IECDPSSMDE VGLWYGRRKG SKQMVNEQRT  60
PLMVAATYGS IGIMKLILSL SEVDVNRPCG FDKSTALHCA ASGGAENAVD AVRLLLEAGA  120
DPNSVDANGH RPGDVIAFPP KLEHVKNSLE ELLQTDDSIA GCNLRVITTS SNAYSPPLST  180
SPDIGSPSAA DFQLKLKSND VPVSSASEKK EYPVDPSLPD IKNSIYSTDE FRMYSFKVRP  240
CSRAYSHDWT ECPFVHPGEN ARRRDPRKYH YSCVPCPDFR KGACRRGDMC EYAHGVFECW  300
LHPAQYRTRL CKDGTNCSRR VCFFAHTAEE LRPLYVSTGS AVPSPRSSTS SAMDFAAAMN  360
MLPGSPSSMS VMSPSPFTPP MSPSANGISH SSVAWPQPNI PALHLPGSNF QSSRLRSSLN  420
ARDIPMDDFD LLHDYDQQQQ LLNELSCLSP QPINSNTLNR SGRMKPLTPS NLDDLFSAES  480
SSPRYADPTL TSAVFSPTHK SAVLNQFQQQ QSLLAPVNTN FSSKNVEHPL LQASFGVQAS  540
GRMSPRNVEP ISPMGSRISM LAQREKQQFR SLSSRELGSN SAVAAAAAAS ANSWSKWGSP  600
NGKMDWSVGA DEVGKLRRSS SFELGNNGEE PDLSWVQSLV KESPTEIKDK LATSVSSVAA  660
AGSSSEVSNM NTQRDTVDPA VLGAWFEQMQ LDHLVAQQN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	46	53	GRRKGSKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein