PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDY01925.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 168aa MW: 19338.6 Da PI: 10.412 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.1 | 7.3e-16 | 20 | 61 | 3 | 44 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i++++ r+vt+ kR++gi+KK +EL +LC++ ++ ii s+ + RDY01925.1 20 ISDDTARKVTYKKRKKGIIKKVSELTILCGIPACAIISSPFD 61 99***********************************99865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence |
MFGTRDSATM ARKKVKLALI SDDTARKVTY KKRKKGIIKK VSELTILCGI PACAIISSPF 60 DPMPETWPDS KATKQVIQRY MNASTLDQSK NINQESFIKQ RIAKAHHQLR KQRQDNLDKQ 120 NTLSLFQYIQ GEEHLPDTIQ ELKKLHKLIE KNMKEIENKL AKIICESS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 12 | 34 | RKKVKLALISDDTARKVTYKKRK |
2 | 31 | 35 | KKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 8e-31 | M-type_MADS family protein |