PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX99358.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | ARF | ||||||||
Protein Properties | Length: 703aa MW: 78298.2 Da PI: 6.2691 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.5 | 2.6e-23 | 127 | 227 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f k+lt sd++++g +++ +++a+e+ + +++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + +++el+v RDX99358.1 127 FSKILTASDTSTHGGFSVLRRHATEClpqldMTQTTPTQELVAKDLHGFEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--RGENGELRV 223 889**************************99555556679************************************************..449999*** PP EEE- CS B3 95 kvfr 98 +v+r RDX99358.1 224 GVRR 227 **98 PP | |||||||
2 | Auxin_resp | 96.8 | 3.3e-32 | 253 | 332 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F v+Y+Pr+ s+F++ ++k+++a+++k+svG R+km+fe eds+err+sGt+vgv d++p WpnS+WrsLk RDX99358.1 253 ASHAVLTSTMFVVYYKPRT--SQFIIGLNKYLEAVNNKFSVGKRLKMRFEVEDSPERRFSGTIVGVGDVSP-GWPNSPWRSLK 332 689999************6..9*************************************************.*********96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 703 aa Download sequence |
MAHLEASHPQ TGVEDGDLYT QLWKLCAGPL VDVPRQGERV FYFPQGHMEQ LQASTNQELN 60 QELTQQIPHF NLPSKILCRV VHIQLLAEQE TDEVYARITL LPESNRDEPT NPDPSLPETQ 120 KQTFHSFSKI LTASDTSTHG GFSVLRRHAT ECLPQLDMTQ TTPTQELVAK DLHGFEWKFK 180 HIFRGQPRRH LLTTGWSTFV TSKRLVAGDA FVFLRGENGE LRVGVRRVAR QQSPMPSSVI 240 SSQSMHLGVL ATASHAVLTS TMFVVYYKPR TSQFIIGLNK YLEAVNNKFS VGKRLKMRFE 300 VEDSPERRFS GTIVGVGDVS PGWPNSPWRS LKVQWDEPAI IPRPERVSSW EIEPFVASTA 360 LNVTQPVVKG KRPRPAEVSS SEIAPNSPAP ALWYHGPHDP TALGGSAEVQ SNENTVVWSS 420 RQKEINGNPM NANNMSSRAR VEGMWPSSPH LSVSSNLYSD PKNSKGVAAQ SCVSGYAPVS 480 SRPNDDSAHD PVECGKRSEN PMDCWIFGVN LTNNFINVAL PDKELGCPPI IPSGPKDSIP 540 VAACETEAGQ NPNYSLSNKE HKQIISDERH TKQPTVPSTR TRTKVQMQGV AVGRAVDLTV 600 LKDYDDLIDE LEKMFDIKGE LQMQTKWAIT FTDDENDMML VGDDPWPEFC TMVKRIFICS 660 KEDVKKIKSK HCASSSEGEE TLLSPDSQNM NDDTQQISCD LTA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 371 | 375 | KRPRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | ARF family protein |