PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX97428.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 345aa MW: 38591.5 Da PI: 7.9105

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX97428.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.1	3.6e-09	84	108	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C f+ G C+ G++C+FaHg RDX97428.1 84 FKTRICAKFRV-GACRNGENCNFAHG 108 69*******.***********8 PP
2	zf-CCCH	27.5	5.4e-09	145	168	2	25
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k++lC+ ++ + +C+yGd+C+F H RDX97428.1 145 KMKLCKKYYNGEECPYGDKCSFLH 168 789*****66********** PP
3	zf-CCCH	41.9	1.7e-13	227	253	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +kt+lC f tG C++Gd C+FaHg+ RDX97428.1 227 WKTKLCIKFETTGLCPFGDDCHFAHGQ 253 8************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence
MSFSDHIPSF MMSPPSFPTD TDAIEVRLQF PMNYESLEPH SPEDQPPLFK KARTSDNIHS 60 NAMPCPPRMI QHPAINKGTS HIFFKTRICA KFRVGACRNG ENCNFAHGIE DMRQPPPNWQ 120 ELVGLRNEER PPSGNWDDDQ KIIHKMKLCK KYYNGEECPY GDKCSFLHED PAKFRDDSGR 180 FRESTAISIG TIGSPKSFGD ASNNVESNRA VNFGLNVCRG NLKNSYWKTK LCIKFETTGL 240 CPFGDDCHFA HGQAELHGSG GRTEAETGAI LNSIKATIPT LHRATSVSSN DAPLSHRPSV 300 APANEEEQGK KNLLKWKGSK KINRIYGDWL DDLPLVQNMP SRVGT

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence

MSFSDHIPSF MMSPPSFPTD TDAIEVRLQF PMNYESLEPH SPEDQPPLFK KARTSDNIHS  60
NAMPCPPRMI QHPAINKGTS HIFFKTRICA KFRVGACRNG ENCNFAHGIE DMRQPPPNWQ  120
ELVGLRNEER PPSGNWDDDQ KIIHKMKLCK KYYNGEECPY GDKCSFLHED PAKFRDDSGR  180
FRESTAISIG TIGSPKSFGD ASNNVESNRA VNFGLNVCRG NLKNSYWKTK LCIKFETTGL  240
CPFGDDCHFA HGQAELHGSG GRTEAETGAI LNSIKATIPT LHRATSVSSN DAPLSHRPSV  300
APANEEEQGK KNLLKWKGSK KINRIYGDWL DDLPLVQNMP SRVGT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	1e-90	C3H family protein