PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX91375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 258aa MW: 29380.9 Da PI: 9.0583 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 42.2 | 1e-13 | 11 | 51 | 3 | 43 |
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 i n+s+r+ t+ kR++g++KK E+ +LC++e++ i++ ++ RDX91375.1 11 ITNDSKRKATLRKRKKGLIKKIDEINILCGIEACAILYTPH 51 89***********************************9886 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence |
MTRKKVNPAY ITNDSKRKAT LRKRKKGLIK KIDEINILCG IEACAILYTP HNPQPEVCPS 60 DWGVQSVLSK FRGVSELEQS KKKFNQESFL RQRIVKAQGQ LKKLKNENRK KEMTLLMFQY 120 FNDGNIFDKA NMIDLNDLSH MIDQILEEIG RKNNMSQTQE EIPIVENGGK PMIQGEQEFV 180 THVQGLVDII NGGGGDEMLT LGDVIESMKH QLATWKGKRL YLGESKDLES MIVDQLMGSL 240 QAYEKGSRED MMSLLSKS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 3 | 25 | RKKVNPAYITNDSKRKATLRKRK |
2 | 22 | 26 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48670.1 | 3e-38 | M-type_MADS family protein |