PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX88552.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 744aa MW: 83128.1 Da PI: 6.3012 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 50.8 | 2.8e-16 | 93 | 146 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +rk +++t+eq++e+e++ ++++p++++r +L+k+lgL rqVk+WFqNrR++ k RDX88552.1 93 KRKYHRHTAEQIREMEAY--ESPHPDEKQRLQLSKQLGLAPRQVKFWFQNRRTQIK 146 79999************6..9*******************************9877 PP | |||||||
2 | START | 223 | 9e-70 | 262 | 483 | 4 | 206 |
HHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECTT CS START 4 eeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetlevissg 88 ++a++e++k+a +ep+Wv+s+ e++n+de++++f+ +++ +e++r++g+v+m+l++lv+++ld++ qW+e+++ ka+t++v+++ RDX88552.1 262 NRATEEFIKMANMGEPLWVRSVetgrEILNYDEYVKEFAVENScterpkTFIEVSRETGLVFMDLPRLVQSFLDVN-QWKEMFPclisKAATVDVVCNR 359 7899**********************************998889****99**************************.********************99 PP ......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHH CS START 89 ......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwl 180 ga+qlm+aelq+l+plvp R+++fvR++++l++++w+ivdvS+d +++ ++s+v+++++pSg++ie+ksngh+kv+wveh +++++++h l RDX88552.1 360 egsngnGAVQLMFAELQMLTPLVPtREVYFVRCCKKLSDEQWAIVDVSIDKVEDNI-DASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSTIHTL 457 99****************************************************98.9***************************************** PP HHHHHHHHHHHHHHHHHHHTXXXXXX CS START 181 lrslvksglaegaktwvatlqrqcek 206 +r +v+sgla+ga++w +tlq qce+ RDX88552.1 458 FRAFVNSGLAFGARHWIETLQLQCER 483 ************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 744 aa Download sequence |
MGVNMSNKLP HTKDLSSPAL SLSLAGIFRH AEEAAAETSG MEVVGDEVRR EDTVEFSSDN 60 SGPMRSRSED NFDGEGTHEN DDNNNENNPE KKKRKYHRHT AEQIREMEAY ESPHPDEKQR 120 LQLSKQLGLA PRQVKFWFQN RRTQIKAIQE RHENSLFKTE LEKLREENKA MRETINKSCC 180 PNCGTVTAID GSISTEEKQL RIENAKLKAE VKKLRTALGK CSPRTTSPSS SAGHDEEESR 240 SSLAFYNGIF GLEKSRITDI VNRATEEFIK MANMGEPLWV RSVETGREIL NYDEYVKEFA 300 VENSCTERPK TFIEVSRETG LVFMDLPRLV QSFLDVNQWK EMFPCLISKA ATVDVVCNRE 360 GSNGNGAVQL MFAELQMLTP LVPTREVYFV RCCKKLSDEQ WAIVDVSIDK VEDNIDASLV 420 KCRKRPSGCI IEDKSNGHCK VIWVEHLECQ KSTIHTLFRA FVNSGLAFGA RHWIETLQLQ 480 CERLVFNMAT NVPTKDSTGV ASLAGRKSIL KLAQRMTWSF CHAVGASSFH TWTKITGKTG 540 EDIRISSRKN LNDPGEPLGV ILSAVSSVWL PVSPNVLFDF LRDEARRSEW DIMSSGGSVQ 600 SITNLAKGKD RGNVVNIQKM QSKDNSVWIL QDSCTSAYES MVVYAPVEFA GIQSVMSGCD 660 SSNVAVLPSG FSILPDGIET RPLVITSRQE EKGTDQGGSL FTMAFQIIAN ASPAKLTMES 720 VEPVNNLVSC TLRNIRTSLQ CEDG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G79840.1 | 0.0 | HD-ZIP family protein |