PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX87830.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | C3H | ||||||||
Protein Properties | Length: 408aa MW: 44718.4 Da PI: 8.3302 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.7 | 1.4e-11 | 39 | 65 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C+++ rtG C++G++C+F+H+p RDX87830.1 39 PGEPDCSYYIRTGLCRFGATCRFNHPP 65 5789*********************97 PP | |||||||
2 | zf-CCCH | 22.8 | 1.6e-07 | 77 | 92 | 11 | 27 |
GTS--TTTTT-SS-SSS CS zf-CCCH 11 rtGtCkyGdrCkFaHgp 27 + GtCk+G++C+F+H++ RDX87830.1 77 K-GTCKFGATCRFHHPR 92 4.9************96 PP | |||||||
3 | zf-CCCH | 37.5 | 3.9e-12 | 114 | 138 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C +++rtG+Ck+G++CkF+H++ RDX87830.1 114 EPECAYYLRTGQCKFGNTCKFHHPQ 138 799********************97 PP | |||||||
4 | zf-CCCH | 38.6 | 1.8e-12 | 270 | 295 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+f+++tG Ck+G+ C+F+H++ RDX87830.1 270 DQPECQFYMKTGDCKFGAVCRFHHPR 295 689*********************96 PP | |||||||
5 | zf-CCCH | 38.2 | 2.4e-12 | 315 | 341 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++lC f++r+G+Ck+G++CkF H++ RDX87830.1 315 PGEPLCVFYSRYGICKFGPSCKFDHPM 341 589**********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence |
MMSLFENLTC SYHVISDAMW QINLRSSETM ESGPYPEHPG EPDCSYYIRT GLCRFGATCR 60 FNHPPNRKLA IAAARMKGTC KFGATCRFHH PRDKAGIAGR VALNILGYPL RPNEPECAYY 120 LRTGQCKFGN TCKFHHPQPN NMVLSMRSSP VYPTVHSPTT PGQQSYATGI TNWSSSSYIP 180 SPRWQGPSSY APLILPQGMV SVPGWNAYSG QMGSDSPQQT MGNGQSYGTS RQNEPANAGS 240 QGAYSQFRSG SVPVGFYALP RENIFPERPD QPECQFYMKT GDCKFGAVCR FHHPRERMIP 300 APDCVLSPIG LPLRPGEPLC VFYSRYGICK FGPSCKFDHP MGVFTYNISA SPSADAPGRR 360 MLGSSSGTAA LNLSSEGLVE SGSAKPRRLS LSETRQIPSG DDDIDEEG |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02830.1 | 1e-166 | C3H family protein |