PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX87171.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 895aa MW: 98098.2 Da PI: 6.7071

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX87171.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	471	491	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg RDX87171.1 471 PCPDFRK-GACRRGDMCEYAHG 491 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 895 aa Download sequence
MPLPDWWIRN PHFISLHHSN KFLYSQPLQP ARTFPKPFCS GLSLSPALPV PRDFIWTSFD 60 VHFSIISFHF TAIPLSPIGS FFKFALNFSP FQFHFRRRYS LFPCFLGSID GDGNPESYFR 120 SISFSASDSV FAFCHSPFRL TQSLFLFPLY FFIGFGIRSS PHPLLIANRS MCGGPEKSKS 180 LSTPSSSAGE GSTNVRDMKN LTVHTEDSFS CLLELASNND FEDFKLALDR DASLINEVGL 240 WYVRQVGSKQ IVLEHRTPLM VAAIYGSIDV LKLILSCPDA DVNFSCGTDK STALHCAASG 300 GSVNAVDVVK LLLSVGADIN CVDANGNRPI DVIVVPPKLN LKARLEDLLS DSANDESVFE 360 CSIPVSVNSS SSDSAAHLSS PDNGLPSSPM ASKFTDTAVN STSEKKEYPV DPSLPDIKNS 420 IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC 480 RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAEELRPL YVSTGSAVPS 540 PRSSASTPNV MDMAAAMSLF PSSPSSISSM SPSPFAQPMS PSTSGISHSS TAWPQPNVPA 600 LHLPLSNIQT SRLRSSLNAR DMPPEDFDVL QDFDGQQHLL NDLGCFSQPR PDAIAISVSR 660 SGRSKTLTPS NLDDLFSAEI SSSPRYSDTT AASVFSPTHK SALLNQFQQL QSSLSPINTN 720 VSSPRNVEHP LLQASFGVSS PGRMSPRSME PISPMSSRLS AFAQREKQQQ QLRSLSSREL 780 SANSPVSIVG SPVNSWSNWG SPNGNGKVDW SVNGNELGRL QRSSSFELGN NGEEPDLSWV 840 QSLVKESPTE IKDKLAGSGP VASADGWNSN PQVDSADHSV LGAWLEQMQL DQLVV

Sequence ? help Back to Top

Protein Sequence Length: 895 aa Download sequence

MPLPDWWIRN PHFISLHHSN KFLYSQPLQP ARTFPKPFCS GLSLSPALPV PRDFIWTSFD  60
VHFSIISFHF TAIPLSPIGS FFKFALNFSP FQFHFRRRYS LFPCFLGSID GDGNPESYFR  120
SISFSASDSV FAFCHSPFRL TQSLFLFPLY FFIGFGIRSS PHPLLIANRS MCGGPEKSKS  180
LSTPSSSAGE GSTNVRDMKN LTVHTEDSFS CLLELASNND FEDFKLALDR DASLINEVGL  240
WYVRQVGSKQ IVLEHRTPLM VAAIYGSIDV LKLILSCPDA DVNFSCGTDK STALHCAASG  300
GSVNAVDVVK LLLSVGADIN CVDANGNRPI DVIVVPPKLN LKARLEDLLS DSANDESVFE  360
CSIPVSVNSS SSDSAAHLSS PDNGLPSSPM ASKFTDTAVN STSEKKEYPV DPSLPDIKNS  420
IYATDEFRMF SFKVRPCSRA YSHDWTECPF VHPGENARRR DPRKFHYSCV PCPDFRKGAC  480
RRGDMCEYAH GVFECWLHPA QYRTRLCKDG TSCNRRVCFF AHTAEELRPL YVSTGSAVPS  540
PRSSASTPNV MDMAAAMSLF PSSPSSISSM SPSPFAQPMS PSTSGISHSS TAWPQPNVPA  600
LHLPLSNIQT SRLRSSLNAR DMPPEDFDVL QDFDGQQHLL NDLGCFSQPR PDAIAISVSR  660
SGRSKTLTPS NLDDLFSAEI SSSPRYSDTT AASVFSPTHK SALLNQFQQL QSSLSPINTN  720
VSSPRNVEHP LLQASFGVSS PGRMSPRSME PISPMSSRLS AFAQREKQQQ QLRSLSSREL  780
SANSPVSIVG SPVNSWSNWG SPNGNGKVDW SVNGNELGRL QRSSSFELGN NGEEPDLSWV  840
QSLVKESPTE IKDKLAGSGP VASADGWNSN PQVDSADHSV LGAWLEQMQL DQLVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	C3H family protein