PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RDX86399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 162aa MW: 18892.8 Da PI: 10.3022 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 83.8 | 1.1e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+i+n s rqvtfskRr+g++KKA+ELS+LCda++a+i+fs t kl+ey+s RDX86399.1 9 KKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALIVFSATSKLFEYAS 59 68***********************************************86 PP | |||||||
2 | K-box | 40.2 | 1.5e-14 | 88 | 156 | 17 | 85 |
K-box 17 lqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkek 85 + + L+k++e re+R+l GedL+ L+l+eLq++e+ L+++l+++ + K+e ++++i++l++k++ RDX86399.1 88 ESDSNDILRKKVEDKNRELRQLNGEDLQGLTLQELQKVEELLKRGLSNVSKVKDEKVMQEISTLKRKNN 156 455557799*********************************************************975 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 162 aa Download sequence |
MTRKRIQIKK IDNISSRQVT FSKRRKGLFK KAQELSTLCD ADIALIVFSA TSKLFEYASS 60 SMQQVIERRD RHSAMHRLDR PTIEMQIESD SNDILRKKVE DKNRELRQLN GEDLQGLTLQ 120 ELQKVEELLK RGLSNVSKVK DEKVMQEIST LKRKNNCSLL EE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G22540.1 | 2e-49 | MIKC_MADS family protein |