PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX85186.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 96aa MW: 11155.1 Da PI: 10.5678 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.5 | 4.3e-29 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krienks rq+tfskRrng++KKA+ELS+LCda+va+++fsstgkl+e s RDX85186.1 9 KRIENKSTRQITFSKRRNGLMKKAHELSILCDANVALVVFSSTGKLFELS 58 79********************************************9966 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence |
MGRKKLEIKR IENKSTRQIT FSKRRNGLMK KAHELSILCD ANVALVVFSS TGKLFELSNG 60 DRYTQIARSN RVMLCYKYCQ IGVLIHDELD LKHINR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G10140.2 | 9e-30 | MIKC_MADS family protein |