PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX84930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 110aa MW: 12413.2 Da PI: 6.7957 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 43 | 5.7e-14 | 3 | 47 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+ n v f k r g++KKA+ L +LC+++ avi+fs+ ++l+ + RDX84930.1 3 NEWNLRVMFLKHRIGVFKKASSLATLCGVDLAVIVFSPANRLFSF 47 6778899***********************************998 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence |
MGNEWNLRVM FLKHRIGVFK KASSLATLCG VDLAVIVFSP ANRLFSFGSP SVHSIIQRYT 60 EQAPPPLLRF DLNEAHYIPD ERELHAHLDY LGTEPFAEGY RGSLMVGHTD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 6e-21 | M-type_MADS family protein |