PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RDX82248.1

Organism

Mucuna pruriens

Taxonomic ID

157652

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna

Family

C3H

Protein Properties

Length: 362aa MW: 40080.7 Da PI: 8.0727

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RDX82248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	47.5	2.9e-15	278	303	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg RDX82248.1 278 FKTELCNKWQETGTCPYGDHCQFAHG 303 79***********************8 PP
2	zf-CCCH	18.3	4.1e-06	316	340	1	25
--S---SGGGGTS.--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartG.tCkyGdrCkFaH 25 ykte Cr ++ G C+yG rC+F H RDX82248.1 316 YKTEVCRMVLA-GvVCPYGHRCHFRH 340 9********.66********88 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MHNKDACSPS SNGRFGATAS GQMPSPGGVY GSLYSALSNE NIPSLSANCS NGGGVSLYPY 60 SEPTQYDSCV IQKHQDMVNR HSMCLSRLVE TSKEVEALKQ ENGQLRAANK ELQKQLHLVI 120 QASLENQYGG SSGQPQATLF DVVHGFRGLH VGEGKENCAD WNNNNNHNHN NIINNNNNNK 180 ELQEISDESP TSVIENNVVE VERFSLPKSI SVRSNGYLKI AQSQSAALAT NNNASRNRGA 240 TRPRTSSTPP EAVQKVYVRG GQKEEEPLEM IVYNQGMFKT ELCNKWQETG TCPYGDHCQF 300 AHGIGELRPV IRHPRYKTEV CRMVLAGVVC PYGHRCHFRH ALTEQEKAVV SQPKPRTMKL 360 ER

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MHNKDACSPS SNGRFGATAS GQMPSPGGVY GSLYSALSNE NIPSLSANCS NGGGVSLYPY  60
SEPTQYDSCV IQKHQDMVNR HSMCLSRLVE TSKEVEALKQ ENGQLRAANK ELQKQLHLVI  120
QASLENQYGG SSGQPQATLF DVVHGFRGLH VGEGKENCAD WNNNNNHNHN NIINNNNNNK  180
ELQEISDESP TSVIENNVVE VERFSLPKSI SVRSNGYLKI AQSQSAALAT NNNASRNRGA  240
TRPRTSSTPP EAVQKVYVRG GQKEEEPLEM IVYNQGMFKT ELCNKWQETG TCPYGDHCQF  300
AHGIGELRPV IRHPRYKTEV CRMVLAGVVC PYGHRCHFRH ALTEQEKAVV SQPKPRTMKL  360
ER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	3e-83	C3H family protein