PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX79586.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22936.2 Da PI: 8.6828 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 64.3 | 1.3e-20 | 15 | 57 | 7 | 49 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +qvtfskRr+g++KKA+ELS+LC+a+v +++fs+ +k y + RDX79586.1 15 NTKQVTFSKRRTGLFKKANELSILCGAQVGIVVFSPGNKPYSF 57 568*********************************9998877 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence |
MGRRKIEIRE VNDPNTKQVT FSKRRTGLFK KANELSILCG AQVGIVVFSP GNKPYSFGHP 60 SVEAVAEKFL EENVGESSGV QASNEVGGDL NGLNEQLSEV QAQIRHEEKK GKDLDQRLKQ 120 HQLTHPSNYK ELQLSYLEIQ RKVKDYLDAI EVSESMMLLA QQPVVGVTKQ GFLHPKTLSL 180 RDPVMLQKIE RCSLRNPEIV RQE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34440.1 | 3e-34 | M-type_MADS family protein |