 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | RDX78430.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
|
||||||||
| Family | NF-YA | ||||||||
| Protein Properties | Length: 276aa MW: 30735.5 Da PI: 10.3686 | ||||||||
| Description | NF-YA family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | CBFB_NFYA | 103.4 | 2e-32 | 181 | 237 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58
+ep++VNaKQy++Il+RRq+Ra++e+e+k+ +++rkpylheSRhkhAlrRpRg+gGrF
RDX78430.1 181 EEPVFVNAKQYHGILRRRQSRARAESENKV-IRNRKPYLHESRHKHALRRPRGCGGRF 237
69****************************.**************************9 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 276 aa Download sequence |
MVRILFGKHP TTQKEEKKKK KKKKKKKKEG SEGIGSKGKK DAGYGVWIGR VQRSSSVPTT 60 LPSANTTPTF LPTPIIQLLQ DNEDDGQQQS ESQMQSSSAN GISDPGISTQ NVQYATPGQL 120 GTGHGMVPPV YPYPDPYYRS IFAPYDTQPY PPQAYSGQPM VHLQLMGIQQ AGVPLPTDAV 180 EEPVFVNAKQ YHGILRRRQS RARAESENKV IRNRKPYLHE SRHKHALRRP RGCGGRFLNS 240 KKDENQHNDV ASADKSQSNI NLNSDKNDLT SSDRTS |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 17 | 23 | KKKKKKK |
| 2 | 17 | 25 | KKKKKKKKK |
| 3 | 17 | 28 | KKKKKKKKKKKK |
| 4 | 18 | 24 | KKKKKKK |
| 5 | 18 | 26 | KKKKKKKKK |
| 6 | 18 | 29 | KKKKKKKKKKKK |
| 7 | 19 | 25 | KKKKKKK |
| 8 | 19 | 27 | KKKKKKKKK |
| 9 | 19 | 30 | KKKKKKKKKKKK |
| 10 | 20 | 26 | KKKKKKK |
| 11 | 20 | 28 | KKKKKKKKK |
| 12 | 21 | 27 | KKKKKKK |
| 13 | 22 | 28 | KKKKKKK |
| 14 | 222 | 231 | RHKHALRRPR |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G30500.2 | 3e-51 | NF-YA family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|