PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RDX78217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Mucuna
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Family | ARF | ||||||||
Protein Properties | Length: 857aa MW: 95206.6 Da PI: 6.5935 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 159 | 260 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+lt sd++++g +++ +++a+e+ + k++ +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F + +++el+ RDX78217.1 159 FCKTLTASDTSTHGGFSVLRRHADEClppldmS-KQPPTQELVAKDLHANEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGENGELR 254 99*****************************63.4445569************************************************..449999** PP EEEE-S CS B3 94 vkvfrk 99 v+v+r+ RDX78217.1 255 VGVRRA 260 ***996 PP | |||||||
2 | Auxin_resp | 118.6 | 5.1e-39 | 285 | 367 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 a+ha+ t+++F+v+Y+Pr+s++eF+v++++++++lk+++++GmRfkm+fe+e+++e+r++Gt+vg++d+dp rWp+SkWrsLk RDX78217.1 285 AWHAILTGTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPKRWPESKWRSLK 367 79*******************************************************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 857 aa Download sequence |
MTTSEVSIKG NSVNGNGENN ACGYNNGNDV RNGAGEGQNA SSSSSARDAE AALYRELWHA 60 CAGPLVTVPR EGERVFYFPQ GHIEQVEAST NQVAEQHMPV YNLPPKILCR VINVMLKAEP 120 DTDEVFAQVT LLPEPNQDEN AVEKEAPPPP PPRFHVHSFC KTLTASDTST HGGFSVLRRH 180 ADECLPPLDM SKQPPTQELV AKDLHANEWR FRHIFRGQPR RHLLQSGWSV FVSSKRLVAG 240 DAFIFLRGEN GELRVGVRRA MRQQGNVPSS VISSHSMHLG VLATAWHAIL TGTMFTVYYK 300 PRTSPAEFIV PYDQYMESLK NNYTIGMRFK MRFEGEEAPE QRFTGTIVGI EDADPKRWPE 360 SKWRSLKVRW DETSNIPRPE RVSQWKIEPA LAPPAINPLP MPRPKRPRSN VVPSSPDSSV 420 LTREASSKVS VDPLPASGFQ RVLQGQELST LRGNFAESID SDTAEKSVVW PPAADDEKID 480 VVSTSRRYGS ESWMSMGRHE PTYPDLLSGF GAHGDQSSHT SFVDQIGPVA NLSRKHLLDR 540 EGKHNVPSSL WPVVPSSLSL NFLDSNTKGS AQGGDTTYQV RGNLRYSSAF GEYPVLHGHK 600 VEHSHGNFLM PPPPSTQYES PRSRELLPKP ISGKPCEVSK PKDSDCKLFG ISLLSSPIAL 660 EPSLSQRNVA SEPVGHMHMT SHQQRTFEND QKSEHSRGTK LADGLLNDDH EKLLQTSQSH 720 LKDVQPKSHS GSARSCTKVH KKGIALGRSV DLTKFSDYDE LIAELDQLFE FGGELTSPQK 780 DWLIVYTDNE GDMMLVGDDP WQEFVAMVRK IYIYPKEEIQ KMSPGTLSSK NEENQSTSEG 840 ADGQEIKCQL NHSASDT |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62000.3 | 0.0 | ARF family protein |